cluster # 7672

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Schistosoma mansoni
cluster # 7672 cluster # 7672 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7672#0 length = 487 sequences # 4

consensus_7672#1 length = 368 sequences # 1

consensusID : consensus_7672#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 487
fasta sequence

                              [AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTACCGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTTGGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTCCGACTAA]

[+] EMBL CD195836             [AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAAACATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAAACAATGTTTTGCGTTTNAATC                                                                                                                                                                                                                     ]
[+] EMBL CD197132             [                               AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAGTTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTACCGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTTGGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGA                    ]
[+] EMBL CD140676             [                               AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAATTGTTTGCCGTTTAAATCCTCGACCACAGCATA                                                                                                                                                                                                      ]
[+] EMBL CD197678             [                                                                        GAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGCCGTACCGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTTGGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTCCGACTAA]




>consensus_7672#0
AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAAT
CATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAAC
CGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACC
ACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACAT
CTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAA
CTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTAC
CGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTT
GGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTC
CGACTAA

consensusID : consensus_7672#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACGAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGATTGATTTGGTGAATGAGTGACTATAAATAGAATATACACATGTT]

[+] EMBL CD140589             [AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACGAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGATTGATTTGGTGAATGAGTGACTATAAATAGAATATACACATGTT]




>consensus_7672#1
AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGT
GAAAACGAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGC
ATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTT
TACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAA
ATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATT
GACGTCCATATGTACCGATACTGATTGATTTGGTGAATGAGTGACTATAAATAGAATATA
CACATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7672#0      AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAAT 60
consensus_7672#1      -------------------------------AGCATTTTTGGAATAGATGTGAAGAGAAT 29
                                                     *****************************

consensus_7672#0      CATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAAC 120
consensus_7672#1      CATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACGAACACATAAAATGATTGTAAAC 89
                      ************************************* **********************

consensus_7672#0      CGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACC 180
consensus_7672#1      CGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACC 149
                      ************************************************************

consensus_7672#0      ACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACAT 240
consensus_7672#1      ACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACAT 209
                      ************************************************************

consensus_7672#0      CTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAA 300
consensus_7672#1      CTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAA 269
                      ************************************************************

consensus_7672#0      CTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTAC 360
consensus_7672#1      CTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGATTGAT 329
                      ************************************************** ***    * 

consensus_7672#0      CGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTT 420
consensus_7672#1      TTGGTGAATGAGTGACTATAAATAGAATATACACATGTT--------------------- 368
                         * *      **** * *  * *   ** *** * *                      

consensus_7672#0      GGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTC 480
consensus_7672#1      ------------------------------------------------------------
                                                                                  

consensus_7672#0      CGACTAA 487
consensus_7672#1      -------