These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 487 fasta sequence [AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTACCGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTTGGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTCCGACTAA] [+] EMBL CD195836 [AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAAACATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAAACAATGTTTTGCGTTTNAATC ] [+] EMBL CD197132 [ AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAGTTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTACCGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTTGGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGA ] [+] EMBL CD140676 [ AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAATTGTTTGCCGTTTAAATCCTCGACCACAGCATA ] [+] EMBL CD197678 [ GAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGCCGTACCGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTTGGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTCCGACTAA] consensusID : consensus_7672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACGAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGATTGATTTGGTGAATGAGTGACTATAAATAGAATATACACATGTT] [+] EMBL CD140589 [AGCATTTTTGGAATAGATGTGAAGAGAATCATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACGAACACATAAAATGATTGTAAACCGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACCACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACATCTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAACTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGATTGATTTGGTGAATGAGTGACTATAAATAGAATATACACATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7672#0 AGACATTTTTGTAACACAAGAGTGGGAGAAAAGCATTTTTGGAATAGATGTGAAGAGAAT 60 consensus_7672#1 -------------------------------AGCATTTTTGGAATAGATGTGAAGAGAAT 29 ***************************** consensus_7672#0 CATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACAAACACATAAAATGATTGTAAAC 120 consensus_7672#1 CATAGAGGTAGGGAATTTAGTGTACGAAAGTGAAAACGAACACATAAAATGATTGTAAAC 89 ************************************* ********************** consensus_7672#0 CGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACC 180 consensus_7672#1 CGTAAAATAATGCATTTATATATGCATATGCATAGTTATTAATTACATGTGGATATGACC 149 ************************************************************ consensus_7672#0 ACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACAT 240 consensus_7672#1 ACTGTTTTACGGCATGTCTTACAGACAACTTTACAACACCATTGAAATTTACAATCACAT 209 ************************************************************ consensus_7672#0 CTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAA 300 consensus_7672#1 CTTTCCTGTTGAACAAATGTTTGCCGTTTAAATCCTCGACCACAGCATAAATAATGACAA 269 ************************************************************ consensus_7672#0 CTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATGCTGCCGTAC 360 consensus_7672#1 CTATTTAAACCTTGGGAATTTTCGTCGCATTGACGTCCATATGTACCGATACTGATTGAT 329 ************************************************** *** * consensus_7672#0 CGCGGGTCATGATGACAAAATGTTGGTGATTCACTTATATAAATTAAATCATTTTCTGTT 420 consensus_7672#1 TTGGTGAATGAGTGACTATAAATAGAATATACACATGTT--------------------- 368 * * **** * * * * ** *** * * consensus_7672#0 GGTGATGGTAAAGATGATGGAGATAGTGACGTTGAACTAGTTAACGAATCTAAGGTATTC 480 consensus_7672#1 ------------------------------------------------------------ consensus_7672#0 CGACTAA 487 consensus_7672#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||