cluster # 7677

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Schistosoma mansoni
cluster # 7677 cluster # 7677 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7677#0 length = 477 sequences # 4

consensus_7677#1 length = 117 sequences # 1

consensusID : consensus_7677#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 477
fasta sequence

                              [TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG-TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGT--GCGTGTATGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTATAGAGGATATACTTATCTTTTTTTCCTG-TTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA]

[+] EMBL CD196873             [TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGT  GCGTGTATGTGTGTGTGGTTACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTATAGAGGATATACTTATCTTTTTTTCCTGTTTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATTAAT                             ]
[-] EMBL CD196862             [ TATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACGTAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGCGCGCGTGTGTGTGTGGTAACCCACCAACCCACCATTT                                                                                                                                                                                                              ]
[-] EMBL CD196851             [                             AATTAAATCTTTTTCTTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGG TTATTGTTTATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGCGCGCGTGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTGTAGAGGATATACTTATC    TTTCCTG TTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTATTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA]
[-] EMBL CD196822             [                                  AATCTTTTTCCTTTTGGGTTTGCTTTTTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCAATTCACACAGTCAAATAATATGATTTTCTTC TTTAGGTTTATTGTTAATTTGTTACTTACTTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGT  GCGTGTATGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATACTATTTATAGAGGATATACTTATCTTTTTTTCCTG TTTTTTTGTTCGTTTTTCTATATAATGAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTAATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA]




>consensus_7677#0
TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTT
TTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCA
ATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGGTTATTGTTTATTTGTTACTTAC
TTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGTGTA
TGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATAC
TATTTATAGAGGATATACTTATCTTTTTTTCCTGTTTTTTTGTTCGTTTTTCTATATAAT
GAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTA
ATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA

consensusID : consensus_7677#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [ATAGGGAAAATGGACAATGCAACAAAATGGTGGGTTGGTGGGTTACCACACACACACGCGCGCGCACATACACACACAATAATAATAATAATAATATATTTTGACGATCGTATCATC]

[+] EMBL CD156122             [ATAGGGAAAATGGACAATGCAACAAAATGGTGGGTTGGTGGGTTACCACACACACACGCGCGCGCACATACACACACAATAATAATAATAATAATATATTTTGACGATCGTATCATC]




>consensus_7677#1
ATAGGGAAAATGGACAATGCAACAAAATGGTGGGTTGGTGGGTTACCACACACACACGCG
CGCGCACATACACACACAATAATAATAATAATAATATATTTTGACGATCGTATCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7677#0      TTATTCATTGTGTTCTATTTGTTTTATTCAATTAAATCTTTTTCTTTTTGGGTTTGCTTT 60
consensus_7677#1      ---------ATAGGGAAAATGGACAATGCAACAAAATGGT---------GGGTTGGTGGG 42
                                *     *  **    ** ***  ****  *         ***** *    

consensus_7677#0      TTATAAACAAGATACACGCTGAGACATAGTAAACAACAACAAAAACATGGAAACAAATCA 120
consensus_7677#1      TTACCACACACACACGCGCGCGCACATA-CACACA-CAATAATAATA---ATAATAATAT 97
                      ***  *   * * ** ***    *****  * *** *** ** ** *   * *  ***  

consensus_7677#0      ATTTACACAGTCAAATTATATGATTTTCTTCTTTTAGGTTATTGTTTATTTGTTACTTAC 180
consensus_7677#1      ATTTTGACGATCGTATCATC---------------------------------------- 117
                      ****  **  **  ** **                                         

consensus_7677#0      TTATGTATCGGTCGTGTAATGCTATTATTATTACTATTATTGTGTGTGTATGTGCGTGTA 240
consensus_7677#1      ------------------------------------------------------------
                                                                                  

consensus_7677#0      TGTGTGTGTGGTAACCCACCAACCCACCATTTTGTTGCATTGTCCATTTTCCCTATATAC 300
consensus_7677#1      ------------------------------------------------------------
                                                                                  

consensus_7677#0      TATTTATAGAGGATATACTTATCTTTTTTTCCTGTTTTTTTGTTCGTTTTTCTATATAAT 360
consensus_7677#1      ------------------------------------------------------------
                                                                                  

consensus_7677#0      GAATGATTGTGTGATATGGATATGATTATTATTATTGTTATCATTAGTAATAATGTGTTA 420
consensus_7677#1      ------------------------------------------------------------
                                                                                  

consensus_7677#0      ATGATAGTCTTATATATTTTACATAAATATATACTCCATTCACTTACATGTAATGTA 477
consensus_7677#1      ---------------------------------------------------------