cluster # 7678

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Schistosoma mansoni
cluster # 7678 cluster # 7678 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7678#0 length = 544 sequences # 3

consensus_7678#1 length = 254 sequences # 1
consensus_7678#2 length = 252 sequences # 1

consensusID : consensus_7678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 544
fasta sequence

                              [ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCTTTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATGCTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTGTGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATCCCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGACGTAAGGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCAACTATTTTAGAACCATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAACATTTCATGATGAAAATGGTCAAATGATCAAACGTATTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG]

[+] EMBL CD083527             [ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCTTTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATGCTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTGTGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATCCCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGACGTAAGGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCAACTATTTTAGAACCATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAACATTTCATGATGAAAATGGTCAAATGATCA                                                                                              ]
[+] EMBL CD195729             [                                                                                                       TTTGGAATTTGGTGATGCTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTGTGTCCTTGCTGAATTCTACT                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD093228             [                                                                                                                                                                                                                                                                                                    TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCGACTATTTTGGAACCATCAATTGGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAACATTTCATGATGAAAATGGTGAAATGATCAAACGTATTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG]




>consensus_7678#0
ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCT
TTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATG
CTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTG
TGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATC
CCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGAC
GTAAGGGTCCTGAACGGAAAGTGAAAGGGTGGTCATATATTGATCCAACTATTTTAGAAC
CATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAAA
CATTTCATGATGAAAATGGTCAAATGATCAAACGTATTGTTAAACGTTCTGAAGTGACTA
CTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTA
ATGG

consensusID : consensus_7678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGAGTGGAGGTTTAGGAATTCNNNCCCNNNNCTTGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTGACCCCAACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG]

[-] EMBL CD093231             [TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGAGTGGAGGTTTAGGAATTCNNNCCCNNNNCTTGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTGACCCCAACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCTGAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATCGTTCATGCTAATGG]




>consensus_7678#1
TTCTAGACGTAAAGGTCCTGAACGGAAAGTGAAAGAGTGGAGGTTTAGGAATTCNNNCCC
NNNNCTTGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTG
ACCCCAACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCT
GAAGTGACTACTACAAAAACTGTTAGTGAACGTATTACTGCAAGTACTACGGGTCAAATC
GTTCATGCTAATGG

consensusID : consensus_7678#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [AAAATCTGTGTGTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCTACATGTACCAATTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATACCTATCCAGGTGCAATCCCAGGTTCAATTCTTTCAATCGACTGCATTGTTTGTCCAATTGATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCTTTACGTCTACAA]

[+] EMBL CD093234             [AAAATCTGTGTGTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCTACATGTACCAATTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATACCTATCCAGGTGCAATCCCAGGTTCAATTCTTTCAATCGACTGCATTGTTTGTCCAATTGATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCTTTACGTCTACAA]




>consensus_7678#2
AAAATCTGTGTGTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCT
ACATGTACCAATTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATA
CCTATCCAGGTGCAATCCCAGGTTCAATTCTTTCAATCGACTGCATTGTTTGTCCAATTG
ATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCT
TTACGTCTACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7678#0      ATTGTGATGAAATTGAAAATTATGGTGAAGCATTCTCTAAAGATGATGTGATCGGTTGCT 60
consensus_7678#1      ------------------------------------------------------------
consensus_7678#2      ------------------------------------------------------------
                                                                                  

consensus_7678#0      TTTTGGATACGATTGAACACACTATTAAATGGTCAAAAAACGGTTTGGAATTTGGTGATG 120
consensus_7678#1      ------------------------------------------------------------
consensus_7678#2      ------------------------------------------------------------
                                                                                  

consensus_7678#0      CTTATCAAATTCCATCTGAATTGTTACATTCTAAAAATTTGACAGCATTATATCCAACTG 180
consensus_7678#1      ------------------------------------------------------------
consensus_7678#2      ------------------------------------------------------------
                                                                                  

consensus_7678#0      TGTCCTTGCTGAATTCTACTGTGGAATTGAACTTTGGCGATAAACCATTTAAATATTATC 240
consensus_7678#1      ------------------------------------------------------------
consensus_7678#2      ------------------------------------------------------------
                                                                                  

consensus_7678#0      CCGGGCCTGATTGGACGCCTGTATGCTGTGCTCCTCCTGAATGTACAAAACGTTCAAGAC 300
consensus_7678#1      ----------------------------------------------------TTCTAGAC 8
consensus_7678#2      -------------------------------------------------AAAATCTGTGT 11
                                                                           **     

consensus_7678#0      GTAAGGGTCCTGAACGGAAAGTGAAAG-GGTGGTCATATATTGATCCAACTATTTTAGAA 359
consensus_7678#1      GTAAAGGTCCTGAACGGAAAGTGAAAG-AGTGGAGGTTTAGGAATTCNNNC-CCNNNNCT 66
consensus_7678#2      GTTGTCAGTGTGCGCGTTACGTATATTTACTCACAGGTTATGAATATCTACATGTACCAA 71
                      **        **  **  * **  *     *       **   **               

consensus_7678#0      CCATCAATTCGACAAACAATGCAGTCGATTGAAAGAAGTGAACCACAAATTGAAACAGAA 419
consensus_7678#1      TGTTCCACTGCCTGCACAATCACTCCGATTGNAAGAAATGAAACACAAATTGTGACCCCA 126
consensus_7678#2      TTGACACTCGCATGAGAATCCGTTTTCCCTAGTGTACATGTATACTATACCTATCCAGGT 131
                          *            *           *     *  ** *    * *      *    

consensus_7678#0      ACATTTCATGAT-GAAAATGGTCAAATGATCAA-ACGT-ATTGTTAAACGTTCTGAAGTG 476
consensus_7678#1      ACACTTCATTATTAAAAAAGGNGTAATAATAAATACGTCGTTGTTAAACGTTCTGAAGTG 186
consensus_7678#2      GCAATCCCAGGTTCAATTCTTTCAATCGACTGC------ATTGTT---TGTCC--AATTG 180
                       ** * *    *  **        *   *           *****    ** *  ** **

consensus_7678#0      ACTACTACAAAAACTGTTAG-TGAACGTATTACTGCAAGTAC---TACGGGTCAAATCGT 532
consensus_7678#1      ACTACTACAAAAACTGTTAG-TGAACGTATTACTGCAAGTAC---TACGGGTCAAATCGT 242
consensus_7678#2      ATGGTTCCAAAATAAGTTGGATCAATATATGACCACCCTTTCACTTTCCGTTCAGGACCT 240
                      *    * *****   *** * * **  *** **  *   * *   * * * ***   * *

consensus_7678#0      TCATGCTAATGG 544
consensus_7678#1      TCATGCTAATGG 254
consensus_7678#2      TTACGTCTACAA 252
                      * * *   *