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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 929 fasta sequence
[TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG-CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA-CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTGNGATTTAATTNTTTTTACTTACTCTTTTC]
[-] EMBL CD128977 [TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAATCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTGGCATTGGCTGTTTTATGTGAAGAA CAACCACATGAATTAGGTGATgctcggtat ]
[+] EMBL CD128832 [ CTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTC CACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAAAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTGCCCCAT ATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTGTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAACCTTCC ]
[+] EMBL CD064074 [ tACTTCAAAAA CTGTTAGT ATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAACATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAA ]
[+] EMBL CD079062 [ AAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTGNGATTTAATTNTTTTTACTTACTCTTTTC]
consensusID : consensus_7680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence
[ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAACATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGATATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTACATGATGGAGACCTGT]
[-] EMBL CD077186 [ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAACATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGATATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTACATGATGGAGACCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7680#0 ------------------------------------------------------------
consensus_7680#1 ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAA 60
consensus_7680#0 -----TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT 55
consensus_7680#1 CATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT 120
*******************************************************
consensus_7680#0 GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG 115
consensus_7680#1 GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG 180
************************************************************
consensus_7680#0 AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC 175
consensus_7680#1 AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC 240
************************************************************
consensus_7680#0 GCAATAAATCATCTGCCTTCATACGAGG-AACTTTCTCCGGAACTTCAAAAACCTGTTAG 234
consensus_7680#1 GCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTT---AACCGATCAT 297
**************************** * ** **** **** * *
consensus_7680#0 TAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAA 294
consensus_7680#1 TGAT------ATTAGTATT--ATTTTCTATTTTATTAATTTATAT-CAGAACAATCGTGA 348
* ** ** * ** * ** * ** *** * *** ** * * *
consensus_7680#0 AAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGA 354
consensus_7680#1 CAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATC----A 404
* ** * ** ** * * * * ** ** * * *** *
consensus_7680#0 TGGTGCCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGG 414
consensus_7680#1 TTGTGCC---GAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTG 461
* ***** * *** ** *** * * * *** * ** * * *
consensus_7680#0 TTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAACTTCCACATGAATTAGGTGA 474
consensus_7680#1 TTTTATTCCTATTTT----CTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCAT 517
*** * *** * * ** ** * * * * ***
consensus_7680#0 TATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGT 534
consensus_7680#1 TAGTGTTGTATT-----GTTTTCGGTTACATG-ATGGAGACCTGT--------------- 556
** ** **** * *** * * ** ** * * ** *
consensus_7680#0 TTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGA 594
consensus_7680#1 ------------------------------------------------------------
consensus_7680#0 TGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGA 654
consensus_7680#1 ------------------------------------------------------------
consensus_7680#0 TATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTG 714
consensus_7680#1 ------------------------------------------------------------
consensus_7680#0 GGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGAT 774
consensus_7680#1 ------------------------------------------------------------
consensus_7680#0 TTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTT 834
consensus_7680#1 ------------------------------------------------------------
consensus_7680#0 TCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTT 894
consensus_7680#1 ------------------------------------------------------------
consensus_7680#0 TTATTGNGATTTAATTNTTTTTACTTACTCTTTTC 929
consensus_7680#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||