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Schistosoma mansoni
cluster # 7680 cluster # 7680       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7680#0 length = 929 sequences # 4  
consensus_7680#1 length = 556 sequences # 1  

consensusID : consensus_7680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 929
fasta sequence
                              [TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG-CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA-CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTGNGATTTAATTNTTTTTACTTACTCTTTTC]

[-] EMBL CD128977             [TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAATCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTGGCATTGGCTGTTTTATGTGAAGAA CAACCACATGAATTAGGTGATgctcggtat                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD128832             [                 CTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTC CACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAAAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTGCCCCAT ATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTGTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAACCTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD064074             [                                                                                                                                                                                                                       tACTTCAAAAA CTGTTAGT ATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAACATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAA                                                                                                                                                                                                                                                       ]
[+] EMBL CD079062             [                                                                                                                                                                                                                                                                                            AAAAGCATAAAAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTG CCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAA CTTCCACATGAATTAGGTGATATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTGNGATTTAATTNTTTTTACTTACTCTTTTC]


>consensus_7680#0 TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAA AGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAG GTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAAT AAATCATCTGCCTTCATACGAGGAACTTTCTCCGGAACTTCAAAAACCTGTTAGTAATGA ACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAAAAGTTG GCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGATGGTGC CCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGGTTTAGG AATAAGTTTAACATTGGCTGTTTTATGTGAAGAACTTCCACATGAATTAGGTGATATTGC TGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGTTTCTGC GTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGATGTAGC GCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGATATGCT TCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTGGGCAAT GTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGATTTCATT GACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTTTCGTAA CTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTTTTATTG NGATTTAATTNTTTTTACTTACTCTTTTC



consensusID : consensus_7680#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence
                              [ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAACATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGATATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTACATGATGGAGACCTGT]

[-] EMBL CD077186             [ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAACATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGTGATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACGAACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGACGCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGATATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTACATGATGGAGACCTGT]


>consensus_7680#1 ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAA CATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC GCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTTAACCGATCATTGA TATTAGTATTATTTTCTATTTTATTAATTTATATCAGAACAATCGTGACAATTAGTGTTA TCATACACAGTACCAATATGATATTATACTAATACTATACATCATTGTGCCGAATTTGAA AATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTGTTTTATTCCTATTTTCTAG TGTTTCTAACTATGATAATCATGTGTCAATCGACCATTAGTGTTGTATTGTTTTCGGTTA CATGATGGAGACCTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7680#0      ------------------------------------------------------------
consensus_7680#1      ATGAATAAAAGTCAAAATGGATTTCATATAGATCAATTTAATCATCATCATCACCATCAA 60
                                                                                  

consensus_7680#0      -----TCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT 55
consensus_7680#1      CATTGTCATCAACAAGGAAGACCTTCACTGGTAATACCCGTCGAAACCGTAGTAGACGGT 120
                           *******************************************************

consensus_7680#0      GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG 115
consensus_7680#1      GATAAAGATGGGCCTATTTTTGAGTTCACACCTAACCGTTCTGATCAGTCGAAAACAACG 180
                      ************************************************************

consensus_7680#0      AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC 175
consensus_7680#1      AACAGGTCTCTGGTAGATGGTGAGACAGATTTACGGTGTGAATCGCCTCCAACTGAAGAC 240
                      ************************************************************

consensus_7680#0      GCAATAAATCATCTGCCTTCATACGAGG-AACTTTCTCCGGAACTTCAAAAACCTGTTAG 234
consensus_7680#1      GCAATAAATCATCTGCCTTCATACGAGGTGGATAACTTGTTTACTTT---AACCGATCAT 297
                      ****************************    *  **     ****    ****  * * 

consensus_7680#0      TAATGAACAAATAAATACACAACCAATAATCCAGTCAACCCATACACTGAAAAAGCATAA 294
consensus_7680#1      TGAT------ATTAGTATT--ATTTTCTATTTTATTAATTTATAT-CAGAACAATCGTGA 348
                      * **      ** * **    *      **    * **   ***  * *** ** * * *

consensus_7680#0      AAGTTGGCAACATAGACTACGTGATTTAGAACCTGTTGCCTGGATGATTTTTATCGGTGA 354
consensus_7680#1      CAATTAGTGTTATCATACACAGTACCAATATGATATTATACTAATACTATACATC----A 404
                       * ** *    **     **   *   * *   * **      **  * *  ***    *

consensus_7680#0      TGGTGCCCATAATTTTATGGATGGACTTTCAATAGGTGTTGGATTTACTCAAAGTATCGG 414
consensus_7680#1      TTGTGCC---GAATTTGAAAATATCAAGTCAGCAAAGTTACGTTTTTTCTACAGAAACTG 461
                      * *****    * ***    **      ***  *    *  * ***    * ** * * *

consensus_7680#0      TTTAGGAATAAGTTTAACATTGGCTGTTTTATGTGAAGAACTTCCACATGAATTAGGTGA 474
consensus_7680#1      TTTTATTCCTATTTT----CTAGTGTTTCTAACTATGATAATCATGTGTCAATCGACCAT 517
                      ***       * ***     * *   ** **  *     * *      * ***       

consensus_7680#0      TATTGCTGTACTTCTACGTTCTGGACTAACTGTACCAATGGCTATGTTATTTAATTTTGT 534
consensus_7680#1      TAGTGTTGTATT-----GTTTTCGGTTACATG-ATGGAGACCTGT--------------- 556
                      ** ** **** *     *** * *  **  ** *   *   ** *               

consensus_7680#0      TTCTGCGTGTACGGCTTATATAGGATTGTTTATTGGTTTATCTGTTGGTGATCTAAATGA 594
consensus_7680#1      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TGTAGCGCCATATGTGTTTGCTTTAACCGGTGGCTTCTTTATGTATATTGCTCTTGCAGA 654
consensus_7680#1      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TATGCTTCCAGAAATGCGTGCTATGGAAGATGCAAAACGATTAGAGAATGGTAATTGTTG 714
consensus_7680#1      ------------------------------------------------------------
                                                                                  

consensus_7680#0      GGCAATGTTTTTCACCAATCTTATTGGTCTCCTATTCGGTTTTGGATGTATTGTTACGAT 774
consensus_7680#1      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TTCATTGACTAGTGAATATATTAATATATAATTATTATTATTATTATTACTATTATTCTT 834
consensus_7680#1      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TCGTAACTTATCAAGTATAATCAAACAATANACTAAGAATTTGTCAATTCAATGATTTTT 894
consensus_7680#1      ------------------------------------------------------------
                                                                                  

consensus_7680#0      TTATTGNGATTTAATTNTTTTTACTTACTCTTTTC 929
consensus_7680#1      -----------------------------------
                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)