cluster # 7682

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7682 cluster # 7682 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7682#0 length = 716 sequences # 3

consensus_7682#1 length = 433 sequences # 2

consensusID : consensus_7682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 716
fasta sequence

                              [CCAGAATCGGCACGAGGGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAATTAATCGTTAAAACACATAATAATGATGATGACGATGTTCAAGGTAATAAAGATCCTCGTTGTTCCATTGTGCGTGAATTACATGTATATGGTAGTGCTGTTCCAGTGGCTGCTAGGGATCCCACGAAGTTTCAACATCAAGGTTTCGGAACTTTACTAATGGAAGAAGCAGAACGTATAGCTAAATATGAACATGGTTCATTGAAGATTGCAGTTATATCCGGTGTGGGGACTAGAAACTACTATCGAAAATTGGGTTATAAATTAGAG]

[+] EMBL CD083946             [CCAGAATCGGCACGAGGGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAATTAATCG                                                                                                                                                                                                                                                                       ]
[-] EMBL CD166476             [                         TGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGA TATGTTGC AAT GT GTTGGcgat                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD140745             [                                                                                                                                                                                                                                                                               TGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAATTAATCGTTAAAACACATAATAATGATGATGACGATGTTCAAGGTAATAAAGATCCTCGTTGTTCCATTGTGCGTGAATTACATGTATATGGTAGTGCTGTTCCAGTGGCTGCTAGGGATCCCACGAAGTTTCAACATCAAGGTTTCGGAACTTTACTAATGGAAGAAGCAGAACGTATAGCTAAATATGAACATGGTTCATTGAAGATTGCAGTTATATCCGGTGTGGGGACTAGAAACTACTATCGAAAATTGGGTTATAAATTAGAG]




>consensus_7682#0
CCAGAATCGGCACGAGGGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTC
GTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGG
TTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTA
GTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTG
CTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACAAGAAATACATTCACGTGTAA
AACCATATCAGGTTGAACTTGTTCGTAGAGATTATGTTGCAAATGGTGGTTGGGAGACAT
TTTTAGCCTATGAGGATCCATATCAAGATATATTGATCGGTTTATTACGTTTAAGAAAGT
GTTCACTGCAAACATTTAGACCAGAATTAATCGTTAAAACACATAATAATGATGATGACG
ATGTTCAAGGTAATAAAGATCCTCGTTGTTCCATTGTGCGTGAATTACATGTATATGGTA
GTGCTGTTCCAGTGGCTGCTAGGGATCCCACGAAGTTTCAACATCAAGGTTTCGGAACTT
TACTAATGGAAGAAGCAGAACGTATAGCTAAATATGAACATGGTTCATTGAAGATTGCAG
TTATATCCGGTGTGGGGACTAGAAACTACTATCGAAAATTGGGTTATAAATTAGAG

consensusID : consensus_7682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 433
fasta sequence

                              [AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATATGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATTTTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACA]

[-] EMBL CD136574             [AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATATGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATTTTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACT                                                                                                                                                  ]
[+] EMBL CD140821             [  GCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATATGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATTTTGAAAATCCGGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTGGTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGCTAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTATTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTGAACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTGAAGTTGGCATACA]




>consensus_7682#1
AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATA
TGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATT
TTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTG
GTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGC
TAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTA
TTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTG
AACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTG
AAGTTGGCATACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7682#0      ------------------------------------------------------------
consensus_7682#1      AAGCTGTTTGTGAATCATTTCATTTATCTAAAGATGCTGGATTTAAAGTTGTTTCACATA 60
                                                                                  

consensus_7682#0      ------------------------------------------------------------
consensus_7682#1      TGATGCCTGATCTACCAAATGTTGGCTGGGAACGTGATTTAGCACAATTTGCTGAATATT 120
                                                                                  

consensus_7682#0      ------------------------------CCAGAATCGGCACGAGG---GTTATACGTG 27
consensus_7682#1      TTGAAAATCCAGCATTTCGTTCAGATGGATTAAAAATTTATCCAACACTTGTTATACGTG 180
                                                      * ***     * *     **********

consensus_7682#0      GTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGC 87
consensus_7682#1      GTACAGGTTTATATGAATTATGGCGTACTGGTCGTTATAAAAGTTATCCACCTGGTATGC 240
                      ************************************************************

consensus_7682#0      TAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTA 147
consensus_7682#1      TAATTGATTTGATTGCTAGAATATTAGCTTTGGTTCCACCATGGACTCGAATTTATCGTA 300
                      ************************************************************

consensus_7682#0      TTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTG 207
consensus_7682#1      TTCAAAGAGATATTCCTATGCCATTGGTAACTAGTGGTGTGGAACATGGTAATTTACGTG 360
                      ************************************************************

consensus_7682#0      AACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTG 267
consensus_7682#1      AACTTGTATTAGCTCGAATGGAAGAACTAGGTGCTAGCTGTCGTGATGTTCGAACACGTG 420
                      ************************************************************

consensus_7682#0      AAGTTGGCATACAAGAAATACATTCACGTGTAAAACCATATCAGGTTGAACTTGTTCGTA 327
consensus_7682#1      AAGTTGGCATACA----------------------------------------------- 433
                      *************                                               

consensus_7682#0      GAGATTATGTTGCAAATGGTGGTTGGGAGACATTTTTAGCCTATGAGGATCCATATCAAG 387
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      ATATATTGATCGGTTTATTACGTTTAAGAAAGTGTTCACTGCAAACATTTAGACCAGAAT 447
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      TAATCGTTAAAACACATAATAATGATGATGACGATGTTCAAGGTAATAAAGATCCTCGTT 507
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      GTTCCATTGTGCGTGAATTACATGTATATGGTAGTGCTGTTCCAGTGGCTGCTAGGGATC 567
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      CCACGAAGTTTCAACATCAAGGTTTCGGAACTTTACTAATGGAAGAAGCAGAACGTATAG 627
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      CTAAATATGAACATGGTTCATTGAAGATTGCAGTTATATCCGGTGTGGGGACTAGAAACT 687
consensus_7682#1      ------------------------------------------------------------
                                                                                  

consensus_7682#0      ACTATCGAAAATTGGGTTATAAATTAGAG 716
consensus_7682#1      -----------------------------