cluster # 7685

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Schistosoma mansoni
cluster # 7685 cluster # 7685 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7685#0 length = 864 sequences # 4

consensus_7685#1 length = 289 sequences # 1

consensusID : consensus_7685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 864
fasta sequence

                              [CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTGGTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAACTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATAAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCGGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCCAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGTTCGATTAAGTAGAA--GAAA-TAAATAAATCTTTAGCTTAATATTAAACACACACGATGTGTAAAACGAA]

[+] EMBL CD081773             [CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTGGTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAACTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATAAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCGGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCCAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGTTCGATTAAGTAGAA  GAAA TAAATAAATCTTTA                                   ]
[-] EMBL CD075504             [                                                                                                                                                  CTTTAGTTAATTGTGCTAATAAAGTGAACTAACACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATAAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCGGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCCAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGTTCGATTAAGTAGAA  GAAATTGAAT AATCTTTAGCTTAA                             ]
[+] EMBL CD190803             [                                                                                                                                                                                                                                             TCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAAAGGGCATTCTTCTTCTGCGATCAGCAAATACC                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI390067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTAAATATGGTCTGGGAAGTAAAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAATTATAAAACTATGTATGCTCGATTAAGTAGAAGTGAAT TAAATAAATCTTTAGCCTTTTATTAAACACACACGATGTGTAAAACGAA]




>consensus_7685#0
CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTG
GTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAA
CTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACA
CCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCT
ACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAG
CTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACA
AACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGAT
GAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGAAATGAACGACTACTACAAA
AGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAATA
AACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTCG
GTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATCC
AGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTAA
AACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAAT
TATAAAACTATGTATGTTCGATTAAGTAGAAGAAATAAATAAATCTTTAGCTTAATATTA
AACACACACGATGTGTAAAACGAA

consensusID : consensus_7685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [CACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGGTAATTAAGAAGATTATCCCAAGTCCGTTTAGATNATGAATGG]

[+] EMBL CD064136             [CACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGATGAAGGTAATTAAGAAGATTATCCCAAGTCCGTTTAGATNATGAATGG]




>consensus_7685#1
CACCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATT
CTACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACA
AGCTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGA
CAAACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAG
ATGAAGGTAATTAAGAAGATTATCCCAAGTCCGTTTAGATNATGAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7685#0      CGGCACGCAGGGANCAACACAGTAACTGGCCTTCAAACCTACGAAAGGATAAACGTTGTG 60
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      GTTATTCTATTCTTGGATTTAGATATAACTTGTGAATCTTATAGTAATTGTAGTTGAAAA 120
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      CTTCTTTTCGTAGCTTGGTTTAATTCCTTTAGTTAATTGTGCTAATAAAGTGAACTAACA 180
consensus_7685#1      ----------------------------------------------------------CA 2
                                                                                **

consensus_7685#0      CCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCT 240
consensus_7685#1      CCTAAATATCGTGTTTACACACTATAAACAAACCTTTTACCGACTGTTTGCTGTAATTCT 62
                      ************************************************************

consensus_7685#0      ACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAG 300
consensus_7685#1      ACCGTGCAGACTTTAAAATTTGTTCAAATGAGCCTCGAAATAATTAATACTGTGGACAAG 122
                      ************************************************************

consensus_7685#0      CTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACA 360
consensus_7685#1      CTAACACTTTCAGATCAAATAGAACAAGAGAAAATAAGCTTAAATCTTCTCAGACAGACA 182
                      ************************************************************

consensus_7685#0      AACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGAT 420
consensus_7685#1      AACTGCAAATTAGAAGAATCCATCGACATTTTAGAGGATCAGCTGGCTTCAATTGAAGAT 242
                      ************************************************************

consensus_7685#0      GAAGATAATGAATGGAAGACGAGATATTTAATTCAGAAAGA-AATGAACGACTACTACAA 479
consensus_7685#1      GAAGGTAATTAA--GAAGATT--ATCCCAAGTCCGTTTAGATNATGAATGG--------- 289
                      **** **** **  *****    **    * * *    ***  ***** *          

consensus_7685#0      AAGGGCATTCTTCTTCTGCGATCAGCAAATACCGAAGGCAAAAGCACTTCAACGAACAAT 539
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      AAACCGTGCTGTTAGAAGGGGCTCAAAATTATCTAGCTACATGGACCTTGACGAAGATTC 599
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      GGTTCAAGAACTTGAGGACTATCGTACATATATAATTAAATTATGTCGCGAGCTGGAATC 659
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      CAGGATCGATCAAGAAGGAAAGAAATCGAACATTTAATTCTAAATATGGTCTGGGAAGTA 719
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      AAACAAGTGGAGTGAAGAAACTGCCTCCAATGCATTTCTGACTGACATCACTGAAAACAA 779
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      TTATAAAACTATGTATGTTCGATTAAGTAGAAGAAATAAATAAATCTTTAGCTTAATATT 839
consensus_7685#1      ------------------------------------------------------------
                                                                                  

consensus_7685#0      AAACACACACGATGTGTAAAACGAA 864
consensus_7685#1      -------------------------