cluster # 7687

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7687 cluster # 7687 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7687#0 length = 494 sequences # 1

consensus_7687#1 length = 292 sequences # 4

consensusID : consensus_7687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCCTGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGATTTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGTGTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCAACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAA]

[+] EMBL CD094040             [TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCCTGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGATTTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGTGTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCAACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAA]




>consensus_7687#0
TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCC
TGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGAT
TTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGT
GTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCA
ACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATT
GTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGT
TTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGAC
AATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAA
AGAATTTAGTGGAA

consensusID : consensus_7687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 292
fasta sequence

                              [CTAAAAATGTTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT]

[+] EMBL CD191994             [CTAAAAATGTTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT]
[+] EMBL CD191947             [                                                 AGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT]
[+] EMBL CD192028             [                                                 AGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT]
[+] EMBL CD192272             [                                                 AGGTTTGTATGAAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAACAAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACAATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT]




>consensus_7687#1
CTAAAAATGTTGTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTTTGTATG
AAGCTCTGACCCAATATCATCAGTCTAAAGCTTGTTGCGAAGCCAAGCAGTATGGGGAAC
AAGTAGCTCGCATATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTT
TTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGACA
ATGATCATATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7687#0      TGCCGTCCGAATTGTGAAAATTCACTCCAACAAGCTTTGAAATCTTTTAAGATTGCTTCC 60
consensus_7687#1      ------------------------------------------------------------
                                                                                  

consensus_7687#0      TGCACATTTGATTACATATCTTCAGATTTGATGTCTGGGGTTAAAGATCCTCTGCCAGAT 120
consensus_7687#1      ------------------------------------------------------------
                                                                                  

consensus_7687#0      TTGACTCCATCATCACTAACGCTGTTTAGCAATCTTATGCTTGCTCAAGCATATGAATGT 180
consensus_7687#1      -------------------------CTAAAAATGT------TGTTCCAAAAGATTGGTCT 29
                                                **  *** *      ** ** *  * **   * *

consensus_7687#0      GTCCTCTCGAAAGCTGAAAAAGATAAGAAAAAGCCTGGGATTTTAGCAAGAATAGCATCA 240
consensus_7687#1      GGTGTATTAAGCATGAAAAAAGGTTTGTATGAAGCTCTGACCC-------AATATCATCA 82
                      *   * *  *      ****** *  * *  *  **  **          **** *****

consensus_7687#0      ACCTTGACTAATCTTTACGAAGACTGCCTATCAGAGTGTTCAGGTGGAGCTAAAAATATT 300
consensus_7687#1      GTCTAAA--GCTTGTTGCGAAG----CCAAGCAGTATG-------GGGAACAAGTAGCTC 129
                        **  *    *  ** *****    ** * ***  **       **    **  *  * 

consensus_7687#0      GTTCCAAAAGATTGGTCTGGTGTATTAAGCATGAAAAAAGGTGTTGCTCGAAGTAGTTGT 360
consensus_7687#1      G---CATATCATTTGCCTA-TGAGCTAATCA------AAGGTGTTGCTCGAAGTAGTTGT 179
                      *   ** *  *** * **  **   *** **      ***********************

consensus_7687#0      TTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGAC 420
consensus_7687#1      TTTCAGCGAAAGAATTTAGTGGAACAATTTAAACAAGAAGAATCAGTTGCAGTAAAAGAC 239
                      ************************************************************

consensus_7687#0      AATGATCATTTGCCTATGAGCTAATCAAAGGTGTTGCTCGAAGTAGTTGTTTTCAGCGAA 480
consensus_7687#1      AATGATCAT------ATATATCACGAAAAGGTACCGCCTAGAGGAAGTCTTGCTCCTGT- 292
                      *********      **     *   ******   **    ** *  * **      *  

consensus_7687#0      AGAATTTAGTGGAA 494
consensus_7687#1      --------------