cluster # 7690

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Schistosoma mansoni
cluster # 7690 cluster # 7690 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7690#0 length = 457 sequences # 4

consensus_7690#1 length = 201 sequences # 1

consensusID : consensus_7690#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 457
fasta sequence

                              [TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTCGTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC]

[+] EMBL CD152121             [TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGG CTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTCTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATA                                                   ]
[+] EMBL CD152045             [                       GTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCG                                                                                                                         ]
[+] EMBL CD152073             [                       GTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATATCCTGGTTCATCTGAATATGATCAAATGAGATGCATAGTAGAGACTCAAGG TTACCCCCTTCTGATATGTTAAAAAACGCTGGGACATGCAACACATTTTTCGTACGTGATCATTATCGATGTGATTGGCGGTTACAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCATAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTC                                                                                                                                                       ]
[-] EMBL CD116815             [                                                       TTATATCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCCTTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCGATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTCGTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC]




>consensus_7690#0
TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATA
TCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCC
TTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCG
ATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAA
AGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTC
TGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAAC
GGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTC
GTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC

consensusID : consensus_7690#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTG]

[+] EMBL CD168053             [CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGATGCTAAAAATGCGTCCATGTG]




>consensus_7690#1
CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAAAGAGG
CTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTCTGCGT
CTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAACGGAGA
TGCTAAAAATGCGTCCATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7690#0      TCCGTAGAGGTAGTCATTGGGATGTGTTTTAGCTGAGCTTTTCCTCGGCTGGCCTTTATA 60
consensus_7690#1      ------------------------------------------------------------
                                                                                  

consensus_7690#0      TCCTGGTTCATCTGAATATGATCAAATGAGATACATAGTAGAGACTCAAGGTTTACCCCC 120
consensus_7690#1      ------------------------------------------------------------
                                                                                  

consensus_7690#0      TTCTGATATGTTAAAAAACGCTGGGAAATGCAACACATTTTTTGTACGTGATCATTATCG 180
consensus_7690#1      ------------------------------------------------------------
                                                                                  

consensus_7690#0      ATGTGATTGGCGGTTAAAAACTCCGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAA 240
consensus_7690#1      -----CCCGGTACCCTGGAATTCAGGAAGAATATGCTTCTGAAACTGGTCAGCAAGCTAA 55
                              **        ** ** ************************************

consensus_7690#0      AGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTC 300
consensus_7690#1      AGAGGCTAGGAAATATTTTTTTAATTCTCTGAATCAAATCCGTGATGTAAATGGACATTC 115
                      ************************************************************

consensus_7690#0      TGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAAC 360
consensus_7690#1      TGCGTCTGACGAATCAGATCTTGATATTGTCGATCGCCAGCAATTTACTTATCTTTTAAC 175
                      ************************************************************

consensus_7690#0      GGAGATGCTAAAAATGCGTCCATGTGATCGAATAACACCTGATATAGCCCTTAAACATTC 420
consensus_7690#1      GGAGATGCTAAAAATGCGTCCATGTG---------------------------------- 201
                      **************************                                  

consensus_7690#0      GTTCGTAACTATGACTCACCTTCACTGTCAGCCTTTC 457
consensus_7690#1      -------------------------------------