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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 638 fasta sequence
[AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAAATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTGTCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA]
[+] EMBL CD145830 [ ATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAAATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCA ]
[+] EMBL CD145767 [agTGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAG ]
[+] EMBL CD141302 [ AGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTGGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAATAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTGACTAATTGATGTAAGAATTTGAATTTGA ]
[-] EMBL CD140436 [ ctATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAACATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTTAGGTTCAAAAAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTTTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTGTCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA]
consensusID : consensus_7696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTA]
[-] EMBL CD140801 [GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7696#0 AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAA 60
consensus_7696#1 ------------------------------------------------------------
consensus_7696#0 ACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAA 120
consensus_7696#1 ------------------------------------------------------------
consensus_7696#0 CTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGA 180
consensus_7696#1 ----------------------------GTACAGCGAAATAGAGAATAAAGAGTAAGAG- 31
***** ************************
consensus_7696#0 GAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA 240
consensus_7696#1 ---------AGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA 82
***************************************************
consensus_7696#0 GTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAG 300
consensus_7696#1 GTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAG 142
******* ******************************************* ********
consensus_7696#0 GTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTT 360
consensus_7696#1 GTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTT 202
*********************************** ************************
consensus_7696#0 GTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA 420
consensus_7696#1 GTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA 262
** *********************************************************
consensus_7696#0 ATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAA 480
consensus_7696#1 ATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAA 322
** ************************ *********************** ********
consensus_7696#0 ATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG 540
consensus_7696#1 AAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG 382
* *********************************************************
consensus_7696#0 GTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTG 600
consensus_7696#1 GTTCATGTA--------------------------------------------------- 391
*********
consensus_7696#0 TCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA 638
consensus_7696#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||