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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7696 cluster # 7696       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7696#0 length = 638 sequences # 4  
consensus_7696#1 length = 391 sequences # 1  

consensusID : consensus_7696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 638
fasta sequence
                              [AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAAATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTGTCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA]

[+] EMBL CD145830             [ ATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAAATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCA                                                   ]
[+] EMBL CD145767             [agTGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAG                                                                                                                                                                                                                                              ]
[+] EMBL CD141302             [                                                                                                                                                                                                   AGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTGGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAATAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTGACTAATTGATGTAAGAATTTGAATTTGA                                                                                                                                                                                                  ]
[-] EMBL CD140436             [                                                                                                                                                                                                                               ctATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAACATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTTAGGTTCAAAAAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTTTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTGTCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA]


>consensus_7696#0 AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAA ACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAA CTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGA GAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA GTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAG GTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTT GTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA ATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAA ATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG GTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTG TCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA



consensusID : consensus_7696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence
                              [GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTA]

[-] EMBL CD140801             [GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTA]


>consensus_7696#1 GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGAT ACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAAT ATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCA CTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGAT AGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGT AGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGT TCGCTTGTATAATTATTATTTGGTTCATGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7696#0      AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAA 60
consensus_7696#1      ------------------------------------------------------------
                                                                                  

consensus_7696#0      ACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAA 120
consensus_7696#1      ------------------------------------------------------------
                                                                                  

consensus_7696#0      CTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGA 180
consensus_7696#1      ----------------------------GTACAGCGAAATAGAGAATAAAGAGTAAGAG- 31
                                                  *****  ************************ 

consensus_7696#0      GAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA 240
consensus_7696#1      ---------AGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA 82
                               ***************************************************

consensus_7696#0      GTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAG 300
consensus_7696#1      GTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAG 142
                      ******* ******************************************* ********

consensus_7696#0      GTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTT 360
consensus_7696#1      GTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTT 202
                      *********************************** ************************

consensus_7696#0      GTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA 420
consensus_7696#1      GTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA 262
                      ** *********************************************************

consensus_7696#0      ATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAA 480
consensus_7696#1      ATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAA 322
                      ** ************************ *********************** ********

consensus_7696#0      ATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG 540
consensus_7696#1      AAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG 382
                      *  *********************************************************

consensus_7696#0      GTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTG 600
consensus_7696#1      GTTCATGTA--------------------------------------------------- 391
                      *********                                                   

consensus_7696#0      TCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA 638
consensus_7696#1      --------------------------------------
                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)