These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 638 fasta sequence [AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAAATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTGTCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA] [+] EMBL CD145830 [ ATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAAATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCA ] [+] EMBL CD145767 [agTGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAAACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAACTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAG ] [+] EMBL CD141302 [ AGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTGGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAATAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTGACTAATTGATGTAAGAATTTGAATTTGA ] [-] EMBL CD140436 [ ctATAACCAACAATGTAGTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAACATAAAAATAGGTTTAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTTGTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATTGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTTAGGTTCAAAAAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTATTTTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTGTCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA] consensusID : consensus_7696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTA] [-] EMBL CD140801 [GTACAGCGAAATAGAGAATAAAGAGTAAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTAGTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAGGTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTTGTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTAATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAAAAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTGGTTCATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7696#0 AATGATGTGTACAATTGATAGAATGAACAGAGTCTCTAAGTTTGTAAGAGAAAAGTGGAA 60 consensus_7696#1 ------------------------------------------------------------ consensus_7696#0 ACATATCACAATGGCTCTTGCCAAAAATGAATTCACTTTAAGTAATCAGAGAGATGATAA 120 consensus_7696#1 ------------------------------------------------------------ consensus_7696#0 CTAGAAATAATATATGGAGCGGAATATTGTACATTGAAATAGAGAATAAAGAGTAAGAGA 180 consensus_7696#1 ----------------------------GTACAGCGAAATAGAGAATAAAGAGTAAGAG- 31 ***** ************************ consensus_7696#0 GAGAGAGAGAGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA 240 consensus_7696#1 ---------AGAGAGAGTAATGAAGAAAATACAAAGATACTTACAATAACCAACAATGTA 82 *************************************************** consensus_7696#0 GTAGCATTAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTTAGGTCTAG 300 consensus_7696#1 GTAGCATAAGATGCACAGAAAAGAAATAGATCAAAAATATAAAAATAGGTTNAGGTCTAG 142 ******* ******************************************* ******** consensus_7696#0 GTTGACTTTGCAGACGAAATGAAGTATGTTTTATACCACTAGATATTCTGGATGTTAGTT 360 consensus_7696#1 GTTGACTTTGCAGACGAAATGAAGTATGTTTTATANCACTAGATATTCTGGATGTTAGTT 202 *********************************** ************************ consensus_7696#0 GTTGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA 420 consensus_7696#1 GTGGACTACGTACAACCAAAAGCTTCAATAAAACAGATAGCCAATCCTTGTGGTTAACTA 262 ** ********************************************************* consensus_7696#0 ATTGATGTAAGAATTTGAATTTGATGGGAGGAGAACGTAGAAATGATTCTTTAGGTTCAA 480 consensus_7696#1 ATCGATGTAAGAATTTGAATTTGATGGAAGGAGAACGTAGAAATGATTCTTNAGGTTCAA 322 ** ************************ *********************** ******** consensus_7696#0 ATAACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG 540 consensus_7696#1 AAGACTGAAGAAGACCTCTCACATTAAAAACTGCTGGTTCGCTTGTATAATTATTATTTG 382 * ********************************************************* consensus_7696#0 GTTCATGTATTCTAATAGATAATTCCGATGTCGGTACTTCAGGTCCAACAGAATATGGTG 600 consensus_7696#1 GTTCATGTA--------------------------------------------------- 391 ********* consensus_7696#0 TCACAGGCTTCTGATATGTTGGGCAATATTTTACAAGA 638 consensus_7696#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||