cluster # 770

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Schistosoma mansoni
cluster # 770 cluster # 770 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_770#0 length = 681 sequences # 1

consensus_770#1 length = 514 sequences # 1

consensusID : consensus_770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCCCTCTCCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTATCACTAGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGAGAGTGATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCACCACGACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACACTGCCATTGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGACGGNGTCCGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATTCCACCTGACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCTCTTTTTTCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTGCGCTATCCGGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTAATTTCCGCCTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCTTACCATCTCTGTAAAAACCCGCTCTACTG]

[+] EMBL CD141808             [TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCCCTCTCCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTATCACTAGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGAGAGTGATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCACCACGACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACACTGCCATTGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGACGGNGTCCGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATTCCACCTGACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCTCTTTTTTCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTGCGCTATCCGGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTAATTTCCGCCTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCTTACCATCTCTGTAAAAACCCGCTCTACTG]




>consensus_770#0
TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCCCTCT
CCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTATCACT
AGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGAGAGT
GATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCACCAC
GACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACACTGCCAT
TGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGACGGNGTC
CGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATTCCACCT
GACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCTCTTTTT
TCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTGCGCTATCC
GGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTAATTTCCGC
CTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCTTACCATCT
CTGTAAAAACCCGCTCTACTG

consensusID : consensus_770#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [ATACTCTGAATTTGTGTGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAGTAATGTTTGTAGTGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCAACGCATAATACTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCCGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTATAATACAACAACATCATTACCCAGAACGGGAGTGAGAGTATA]

[+] EMBL CD130651             [ATACTCTGAATTTGTGTGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAGTAATGTTTGTAGTGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCAACGCATAATACTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCCGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTATAATACAACAACATCATTACCCAGAACGGGAGTGAGAGTATA]




>consensus_770#1
ATACTCTGAATTTGTGTGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTAC
TGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAGTAATGTTTGTAGT
GATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCAACGCATAATACTG
AGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACC
ACCCGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATAC
AGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTTGCGAGTGCAATTGTCGAACATTTA
TGACTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACA
TACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTATAATACAA
CAACATCATTACCCAGAACGGGAGTGAGAGTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_770#0      ----TCAAACTTTATGATGAGTCGGCCTTTGTCGAACGGGTTTTTGTATCTTGGCATTCC 56
consensus_770#1      ATACTCTGAATTTGTG-TGAATCGTTGTTTTCTGCGAGAATTAAGACGATATGACGATTA 59
                         **  * *** ** *** ***   ***   *   *  **         ** *  *  

consensus_770#0      CTCTCCTTCAATCGCACGGAAATCCTTATTAGTATACACCTCACCGGGTCTGGAATTTAT 116
consensus_770#1      CTGAAGTATTATCGCATGAGATAGCTGCTTTTTTTAGTAATTAACGAG--TAATGTTTGT 117
                     **    *   ****** *  *   **  **  * **    * * ** *  *    *** *

consensus_770#0      CACTAGTGTCCGATCATCTAATGTTCGTATCGTCCGCTGAAAGCCACACAAGGCTTCAGA 176
consensus_770#1      ----AGTGATTTATGTTCCAGAGA-CATTTCGGTCGACTTAAGTGAGGC---GTTTCAAC 169
                         ****    **  ** *  *  * * ***  **    ***  *  *   * ****  

consensus_770#0      GAGTGATAATTCTATGGTGTGTATCAAGTCGTTTCGACGTCTGATGAAACGGCTATGCCA 236
consensus_770#1      GCATAATACTGAGCAGGCGTTTTGGAAACTGGATTGA-ATTCGATGGTGTGTTTAAGGAG 228
                     *  * *** *     ** ** *   **   *  * **  *  ****    *  ** *   

consensus_770#0      CCACGACCTTGACACTGATCACAAATAACTTTTCGCGTAACACCAAGTTTTCTAACAC-- 294
consensus_770#1      TTCCAAAAA-ACCACCCGT-ACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACA 286
                        * *      ***   * **  ***** **    *  * *  **  *    **     

consensus_770#0      TGCCATTGTAGAGCTCTTCTAAAGTCACTGATAACTGGTGCACACAGTCTTTTCCGCGAC 354
consensus_770#1      TGCGATTTAAATACAGTTTTGTGGT-GTTATGAACTAG---ATGCAGGCACTTT-GCGAG 341
                     *** ***  *   *  ** *   **   *   **** *   *  *** *  **  **** 

consensus_770#0      GGNGTCCGCGAGAACGACCACCCCCGAAGACATTTGGAAATATCCATTGGGTCAGCCATT 414
consensus_770#1      TGCAATTGTC-GAACATTTATGACTT--GTCGTCATATACTACTGACATATGTAAAAAGA 398
                      *     *   ****    *   *    * * *     * **   *       *   *  

consensus_770#0      CCACCTGACTCAACTCCACCCTCCTTAATTCCTTGCTCGCCTCTTGTATCATATATTTCT 474
consensus_770#1      CCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACG 458
                     *** **    ** ***  * *    * *  ** ***   *        * * ***   * 

consensus_770#0      CTT--TTTTCAGGGTCACACAGAACCATAAATGCTTGAGAAAATTCTTTGAACTTATCTG 532
consensus_770#1      CATAACTTCCATTATAATACAACAACATCATTACCCAGAACGGGAGTGAGAGTATA---- 514
                     * *   ** **   * * ***  * *** * * *     *      *  **   **    

consensus_770#0      CGCTATCCGGATTTTTGTCTGGGTGATACTTAAAGGCCTTTTGTGCGGTAGCCTTTTTTA 592
consensus_770#1      ------------------------------------------------------------
                                                                                 

consensus_770#0      ATTTCCGCCTCAGTTGCGGGCCCAGGGAACACCGAGCAGATCATAGGACTTCCCTTCCCT 652
consensus_770#1      ------------------------------------------------------------
                                                                                 

consensus_770#0      TACCATCTCTGTAAAAACCCGCTCTACTG 681
consensus_770#1      -----------------------------