cluster # 7700

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7700 cluster # 7700 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7700#0 length = 744 sequences # 4

consensus_7700#1 length = 318 sequences # 1

consensusID : consensus_7700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 744
fasta sequence

                              [TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCATCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAATATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTATGAAGGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGATACGATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCATCACCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCGTTCTTTTTTTTATCAATTTCTAATCGT]

[-] EMBL CD064220             [TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCGGCAGGCTATTTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD084988             [                                ACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTATTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCATCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAATATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGT                                                                                                                                                                                                                                  ]
[+] EMBL CD084861             [                                ACCACTTGTAGCATGGCTTGAACGCTTTTACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCATCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAATATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAAAGGTTCTGTGGGTNATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAAat                                                                                                                                                                                                                                                                         ]
[+] EMBL CD114918             [                                                                                                                                                                                                                                                                                                                       TGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGATGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTATGAAGGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGATACGATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCATCACCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCGTTCTTTTTTTTATCAATTTCTAATCGT]




>consensus_7700#0
TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTT
TACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCA
TCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAAT
ATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACT
TGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCG
CCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCT
CCGGTTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTCATCTTAGTGGTGAT
GATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAATTA
AATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTATGAA
GGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGATACG
ATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCATCA
CCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCGTTC
TTTTTTTTATCAATTTCTAATCGT

consensusID : consensus_7700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGGTTGATATTTACACATTTGTTATGCAATCAACAGTACTCCTCCATCTTAGGGGGGAATGAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATATTTCCTCCCCCCTTTTATATA]

[+] EMBL AW146512             [CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCCGGGTTGATATTTACACATTTGTTATGCAATCAACAGTACTCCTCCATCTTAGGGGGGAATGAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATATTTCCTCCCCCCTTTTATATA]




>consensus_7700#1
CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACTTG
TCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCGCC
AAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCTCC
GGGTTGATATTTACACATTTGTTATGCAATCAACAGTACTCCTCCATCTTAGGGGGGAAT
GAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATATTT
CCTCCCCCCTTTTATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7700#0      TCTAAAGGTAGTACTTCACCCAGTAAACAAGTACCACTTGTAGCATGGCTTGAACGCTTT 60
consensus_7700#1      ------------------------------------------------------------
                                                                                  

consensus_7700#0      TACGCTCATTTGCTTAGTAAATATACTTTGTACTGGTTTGAAATCTTGGTTCGTTCTGCA 120
consensus_7700#1      ------------------------------------------------------------
                                                                                  

consensus_7700#0      TCCAATCTTCAGGAAATTGAAGAAACAGCAAACTCAGAAAATCTGAATCTGGTTGCCAAT 180
consensus_7700#1      ------------------------------------------------------------
                                                                                  

consensus_7700#0      ATCACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACT 240
consensus_7700#1      --CACAAGATTCCAACGAGAATCTAACGCACTAAATATCTCATTATTATTCGATACAACT 58
                        **********************************************************

consensus_7700#0      TGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCG 300
consensus_7700#1      TGTCAGTCATTTCCATTCCTTGGACATGGTTATGTTTTGAGAGGTTCTGTTGGTGATGCG 118
                      ************************************************************

consensus_7700#0      CCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCT 360
consensus_7700#1      CCAAAAGGAATTGAAAGTATTCCACCAATTTTTAATGCTCCATTGGGTAGTTCATTGTCT 178
                      ************************************************************

consensus_7700#0      CCGG-TTGATATTTACACAATTGTTATGCAAATCAACAGTACTCTTC-ATCTTAGTGGTG 418
consensus_7700#1      CCGGGTTGATATTTACACATTTGTTATGCAA-TCAACAGTACTCCTCCATCTTAGGGGGG 237
                      **** ************** *********** ************ ** ******* ** *

consensus_7700#0      A-TGATAAAATTGATGTTAGTGATATTTTAAAACAACCTCGTTATGTATATGACGAGAAA 477
consensus_7700#1      AATGAAAAAATTGATGGTAGTGATATTTTAAAACACCCTCTTTTTTTATATGCCGCGATA 297
                      * *** ********** ****************** **** ** * ****** ** ** *

consensus_7700#0      TTAAATCATACATATTATATTAAAAAATTAGAATGTCGTGTATTTTTAGCGCTGGTTTAT 537
consensus_7700#1      TTTCCTCCCCCCTTTTATATA--------------------------------------- 318
                      **   **   * * ******                                        

consensus_7700#0      GAAGGTTTGAAATCCCATAAAGATAAATTAATTAATGAATTTATATCAATGCTCACAGAT 597
consensus_7700#1      ------------------------------------------------------------
                                                                                  

consensus_7700#0      ACGATTTGTTTACATAAAGTGGTCAATCTGCTAAAACAGCACCGACAACAATTCTCTTCA 657
consensus_7700#1      ------------------------------------------------------------
                                                                                  

consensus_7700#0      TCACCATCTACTGATCGAAGAAGTTTACGGTCGTTGTTTTTTCACTGATTTTCCCTACCG 717
consensus_7700#1      ------------------------------------------------------------
                                                                                  

consensus_7700#0      TTCTTTTTTTTATCAATTTCTAATCGT 744
consensus_7700#1      ---------------------------