cluster # 7703

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Schistosoma mansoni
cluster # 7703 cluster # 7703 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7703#0 length = 593 sequences # 3

consensus_7703#1 length = 367 sequences # 2

consensusID : consensus_7703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 593
fasta sequence

                              [TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAACTGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGAACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGTAGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCAA]

[+] EMBL CD126460             [TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAACTGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGAACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGTAGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGT                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD144826             [                                                                                                                                                                                                        AAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCA ]
[-] EMBL CD144684             [                                                                                                                                                                                                         AGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATTATCCAGAGAAGAAGCTGTAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGTTACACTTCCACCAAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAA]




>consensus_7703#0
TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAAC
TGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGA
ACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGT
AGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATT
ATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCG
TGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACC
AAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCA
ATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACG
CCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACA
TACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCAA

consensusID : consensus_7703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 367
fasta sequence

                              [ATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTACACCATTACCACCTGGATATAAGCCTCCACCACAAATT]

[+] EMBL CD169930             [ATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTACACCATTACCACCTGGATATAAGCCTCCACCACAAATT]
[+] EMBL CD116739             [              AAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCGTGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTA                                      ]




>consensus_7703#1
ATTATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTAT
TCGTGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCC
ACCAAAAGTTACACCAAAATCTAATGATCTTCAATCTGAACTAGTTAGACATTATTTAAT
AGAAGCGGTTAATACACCTACTAAAGGTGTACGCCTTAAAGGTTTTGCAAGTGAACCAGT
ATTTCCAAGTTTAGCTGCTCTAATCAACCGACATACACAAGATGCTTTAGCATTACCTTG
TCGATTGATTCTCCCAGCCATTCCAACTACACCATTACCACCTGGATATAAGCCTCCACC
ACAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7703#0      TGGTACACAATCTGTCTATCCAGATCACATTTCTGTCACAACTACTCAACAAACAATAAC 60
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      TGCTCCAACAAAAGTTGTCAGTAATTTAAATGTTTTGACAAACACTAAAAAGACGAGTGA 120
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      ACTTACCGAAGTTCCTATGCAAAATGGATGGAAACCTGAGAAAATTAAACAAGATGCAGT 180
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      AGATAGTGGTAATATGACTCAAGTGACTGCGACTGCACGAGTTTGGTATCAACCTAAATT 240
consensus_7703#1      ---------------------------------------------------------ATT 3
                                                                               ***

consensus_7703#0      ATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCG 300
consensus_7703#1      ATCCAGAGAAGAAGCTATAAGCATTTTACGTCAACAAGTTCCTGGAAGTTTCCTTATTCG 63
                      ************************************************************

consensus_7703#0      TGATAGTACAACATACAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACC 360
consensus_7703#1      TGATAGTACAACATGCAAAGATGCTTTTGGTTTAGCAGTCAAGGTTGCTACACTTCCACC 123
                      ************** *********************************************

consensus_7703#0      AAAAGTTACACCAAAATCTAGTTTTACCAAATTTGTCAGAAGCATTTTCAATGATCTTCA 420
consensus_7703#1      AAAAGTTACACCAAAATCTA------------------------------ATGATCTTCA 153
                      ********************                              **********

consensus_7703#0      ATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACG 480
consensus_7703#1      ATCTGAACTAGTTAGACATTATTTAATAGAAGCGGTTAATACACCTACTAAAGGTGTACG 213
                      ************************************************************

consensus_7703#0      CCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACA 540
consensus_7703#1      CCTTAAAGGTTTTGCAAGTGAACCAGTATTTCCAAGTTTAGCTGCTCTAATCAACCGACA 273
                      ************************************************************

consensus_7703#0      TACACAAGATGCTTTAGCATTACCTTATCGATTGATTCTCCCAGCCATTCCAA------- 593
consensus_7703#1      TACACAAGATGCTTTAGCATTACCTTGTCGATTGATTCTCCCAGCCATTCCAACTACACC 333
                      ************************** **************************       

consensus_7703#0      ----------------------------------
consensus_7703#1      ATTACCACCTGGATATAAGCCTCCACCACAAATT 367