cluster # 7713

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Schistosoma mansoni
cluster # 7713 cluster # 7713 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7713#0 length = 884 sequences # 4

consensus_7713#1 length = 230 sequences # 1

consensusID : consensus_7713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 884
fasta sequence

                              [TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATGATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGTCAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATACCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCCTGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATGCTTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAATGTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGGACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTGAGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTTATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTACAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC]

[+] EMBL BF936418             [TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATGATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGTCAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATACCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCCTGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATGCTTTACCTTCGAGTATTAAGACTATCCTGGATAC                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD147815             [                  agGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATGATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD156081             [                                                                                                          TTGGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTCGACGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGTCAGAGACAGACAAAGCCGATAGTTCACCAGAGAAGGAGTCACCTGACCCAGCCCATTATACCGCTGAAATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD065962             [                                                                                                                                                                                                                                                                                                                                                                                                                            CCATTATACCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCCTGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATGCCTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAATGTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGGACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTGAGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTTATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTACAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC]




>consensus_7713#0
TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATG
ATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATC
AGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTG
CAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTG
ATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTAT
TCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGT
CAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATA
CCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCC
TGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATG
CTTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAAT
GTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGG
ACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTG
AGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTT
ATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTA
CAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC

consensusID : consensus_7713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 230
fasta sequence

                              [AGAGACAGACAAAGCCGATAGTTCATCAGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTC]

[-] EMBL CD165255             [AGAGACAGACAAAGCCGATAGTTCATCAGAGAATGCATCAGGAGGATGCTCACAACTGCATACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTGCAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTC]




>consensus_7713#1
AGAGACAGACAAAGCCGATAGTTCATCAGAGAATGCATCAGGAGGATGCTCACAACTGCA
TACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTGCAGTCTATGACGGCCATGGTG
GATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTGATTTTTTAATGAAACTTCCTT
ATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTATTCCTTGATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7713#0      TCTATAGCATAAGCATGGGAGCTTATATGTCTAAACCGAAAACAGAGAAAATCTCTGATG 60
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ATGGGGCGAATCAGTGGTTATCTTATAGCTCCTGCTCTATGCAGGGTTGGAGAATGCATC 120
consensus_7713#1      ------------AGAGACAGAC--AAAGCCGATAGTTCAT-------CAGAGAATGCATC 39
                                  ** *     *  * ***   *  *  **         ***********

consensus_7713#0      AGGAGGATGCTCACAACTGCATACCGAACTTCGATGCATCACTAGGTATTTCCTTCTTTG 180
consensus_7713#1      AGGAGGATGCTCACAACTGCATACCGTACTTCGATGCATCACTAGGTATTTCCTTCGTTG 99
                      ************************** ***************************** ***

consensus_7713#0      CAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTG 240
consensus_7713#1      CAGTCTATGACGGCCATGGTGGATCAGAAGTGGCACGATATTGTGCAGAATACATGCCTG 159
                      ************************************************************

consensus_7713#0      ATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTAT 300
consensus_7713#1      ATTTTTTAATGAAACTTCCTTATAATAAATTAAATATGAAGGAAACCTTAAAGCAGTTAT 219
                      ************************************************************

consensus_7713#0      TCCTTGATTTCGATGCTACATTAGTAACTCCTGAAACGAGAGCTGTTTTAAGTAAAATGT 360
consensus_7713#1      TCCTTGATTTC------------------------------------------------- 230
                      ***********                                                 

consensus_7713#0      CAGAGACAGACAAAGCCGATAGTTCATCAGAGAAGGAGTCACCTGACCCAGCCCATTATA 420
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CCGCTGAAATTGATGATAATGATGGAGAGGAAGATGAAAATTATTCTGAACTTTTGGCCC 480
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      TGCGTGCTGAAGCAAACCAACCTTTGGAGGATGTTTTAGAACAATATGGAGGAGAGGATG 540
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CTTTACCTTCGAGTATTAAGACTATCCTGGATACCCGACGTCAACAAAAAGTTGGTGAAT 600
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      GTAGTCGTAATATAAGTAAATCGTCAAAAAGTTCATCAGAAGATAATGATTCAGAGTTGG 660
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ACAAAACAACAGATTCTTCGTGCACTAAAGTATCCAATGCTACTGATGCCAATGCTGTTG 720
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      AGACTGTTGAACGAGGAGACTCATCTTCTGAATCTAGTAATAGAAAAGACAGTACTACTT 780
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      ATTCTCACAATGATGATAATACAAAAAAAGAATTATCAAATGAACCATCAGAAATACCTA 840
consensus_7713#1      ------------------------------------------------------------
                                                                                  

consensus_7713#0      CAGATAAAAATGTAAACAATTNCNACAGTGACTTCGTGGGGTAC 884
consensus_7713#1      --------------------------------------------