These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1169 fasta sequence [AGACATTTTCTTAAAGGTATGGACCAAGGATCACGGCGTCTGAGAGAAGACACTGCAGTTTGTGAGTTTGATTGGATTTGTAGAAGTGGTGGATTTAGACAAAGGTCACCAATCAATGCTGAGTGTTGTGGTAACTGACGTAATTGAACCACATCCTGCTCCTTTAAATTAACCATGTCTCTGTAGTTGTTCAATTTTGCAGGGTAGTTTTGAGCAGCATATGCTGATGCGGCCAAGATAGCTGCTGCAGCGGACGCTCCCATTAATCTTTGACGAGCGCTAATCGAAGGGTCATCTGGGATATGAGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTAACTGAGGTAAGTGGTCGGGTATCACAAATAGGCTGACTAAGTTGACCATATGAAGATGATGTTGAAGCTTGTAAGGGTGGACTATTAACAGGATTAGTACTAGCACTATTTCTTGTACTAGATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAAGACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGACAATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTTTGGTTTACGTCACAAGCTTCATCCTCAGAGAACCATCTGCGACTAGATAGGTTATCATCGTCGACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAACATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTACTGACTGATTACGTAAGTTAGGAGAAAATAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAGAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCCTGTGCAAAAG] [-] EMBL CD125760 [AGACATTTTCTTAAAGGTATGGACCAAGGATCACGGCGTCTGAGAGAAGACACTGCAGTTTGTGAGTTTGATTGGATTTGTAGAAGTGGTGGATTTAGACAAAGGTCACCAATCAATGCTGAGTGTTGTGGTAACTGACGTAATTGAACCACATCCTGCTCCTTTAAATTAACCATGTCTCTGTAGTTGTTCAATTTTGCAGGGTAGTTTTGAGCAGCATATGCTGATGCGGCCAAGATAGCTGCTGCAGCGGACGCTCCCATTAATCTTTGACGAGCGCTAATCGAAGGGTCATCTGGGATATGAGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTAACTG ] [-] EMBL CD197748 [ AGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTAACTGAGGTAAGTGGTCGGGTATCACAAATAGGCTGACTAAGTTGACCATATGAAGATGATGTTGAAGCTTGTAAGGGTGGACTATTAACAGGATTAGTACTAGCACTATTTCTTGTACTAGATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAAGACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGACAATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTTTGGTTTAC ] [+] EMBL CD129497 [ GCACTATTTCTTGTACTAGATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAAGACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGACAATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTTTGGTTTACGTCACAAGCTTCATCCTCAGAGAACCATCTGCGACTAGATAGGTTATCATCGTCGACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAACATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTACTGACTGATTACGTAAGTTAGGAGAAAATAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAA ] [-] EMBL CD114312 [ ttttgcACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAACATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAGTTAGGAGAAAATAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAGAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCCTGTGCAAAAG] consensusID : consensus_7715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [GTACTCTAGAAGCACCCCCGTGAAACCTCGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAGTTAGGAAAAAAATAGTATTTGTCCTCTAAAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAAAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCTGTGGAAGTGACCGGATTTGATCATTTGACCCTAGGATGGAAAGTTGACTTTGAACCTCATCCATGGAGTCATTAATATTAG] [+] EMBL CD059664 [GTACTCTAGAAGCACCCCCGTGAAACCTCGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAGTTAGGAAAAAAATAGTATTTGTCCTCTAAAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAAAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCTGTGGAAGTGACCGGATTTGATCATTTGACCCTAGGATGGAAAGTTGACTTTGAACCTCATCCATGGAGTCATTAATATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7715#0 AGACATTTTCTTAAAGGTATGGACCAAGGATCACGGCGTCTGAGAGAAGACACTGCAGTT 60 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 TGTGAGTTTGATTGGATTTGTAGAAGTGGTGGATTTAGACAAAGGTCACCAATCAATGCT 120 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 GAGTGTTGTGGTAACTGACGTAATTGAACCACATCCTGCTCCTTTAAATTAACCATGTCT 180 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 CTGTAGTTGTTCAATTTTGCAGGGTAGTTTTGAGCAGCATATGCTGATGCGGCCAAGATA 240 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 GCTGCTGCAGCGGACGCTCCCATTAATCTTTGACGAGCGCTAATCGAAGGGTCATCTGGG 300 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 ATATGAGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTA 360 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 ACTGAGGTAAGTGGTCGGGTATCACAAATAGGCTGACTAAGTTGACCATATGAAGATGAT 420 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 GTTGAAGCTTGTAAGGGTGGACTATTAACAGGATTAGTACTAGCACTATTTCTTGTACTA 480 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 GATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAA 540 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 GACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGAC 600 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 AATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTT 660 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 TGGTTTACGTCACAAGCTTCATCCTCAGAGAACCATCTGCGACTAGATAGGTTATCATCG 720 consensus_7715#1 ------------------------------------------------------------ consensus_7715#0 TCGACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAA 780 consensus_7715#1 -------------------------------------------------GTACTCTAGAA 11 *** * * ** consensus_7715#0 CATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTACTGACTGATTACGTAAG 840 consensus_7715#1 GCACCCCCGT---GAAACCTCGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAG 68 ** * ****** ********************** **************** consensus_7715#0 TTAGGAGAAAA-TAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACG 899 consensus_7715#1 TTAGGAAAAAAATAGTATTTGTCCTCTAAAAAGTGGAGGAGGTGGAGAAGGTCGGTAACG 128 ****** **** **************** ******************************* consensus_7715#0 TGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAA 959 consensus_7715#1 TGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAA 188 ************************************************************ consensus_7715#0 TGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGG 1019 consensus_7715#1 TGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGG 248 ************************************************************ consensus_7715#0 TTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCAT 1079 consensus_7715#1 TTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCAT 308 ************************************************************ consensus_7715#0 ACATTGTAAAGTCAAATCGCTCATGTGACTTCCAGAATCAACCAGTTTCTTAATGACATC 1139 consensus_7715#1 ACATTGTAAAGTCAAATCGCTCATGTGACTTCCAAAATCAACCAGTTTCTTAATGACATC 368 ********************************** ************************* consensus_7715#0 ACGTTGCTCTTTTTCTTCCCTGTGCAAAAG------------------------------ 1169 consensus_7715#1 ACGTTGCTCTTTTTCTTCC-TGTGGAAGTGACCGGATTTGATCATTTGACCCTAGGATGG 427 ******************* **** ** * consensus_7715#0 ------------------------------------------ consensus_7715#1 AAAGTTGACTTTGAACCTCATCCATGGAGTCATTAATATTAG 469 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||