cluster # 7717

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Schistosoma mansoni
cluster # 7717 cluster # 7717 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7717#0 length = 305 sequences # 3

consensus_7717#1 length = 118 sequences # 2

consensusID : consensus_7717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 305
fasta sequence

                              [GATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGTTCACAAAGCACATCCAGATGTTGTATGCTTATTACTATGTTATAGAGCTAGAGCGGCTTGTC]

[+] EMBL CD189568             [GATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGCCTCCATTAAGGGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGGTCACAAAGCACATCCAGATGTTGTATGCTTATTGCTATGTTATAAACCTAGAGCGGCTTGg ]
[-] EMBL CD189028             [ ATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGTTCACAAAGCACATCCAGATGTTGTACGCTTATTACTATGTTATAGAGCTAGAGCGGCTTGTC]
[-] EMBL CD189958             [ ATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACAGCCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGCTGTTCACAAAGCACATCCAGATGCTGTATGCTTATTACTATGTTATAGAGCTAGAGCGGCTTGTC]




>consensus_7717#0
GATTATACGTCTGTTACTCGAACATTGTTCATCAACACCATGGATAGTAGATGAGACACA
ACCCGATGGTTTGACTGCATTACACTTAGCTTCATTAAATGGAAATATGGAAGCTGTAGA
TCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCTGGCTTGTC
TCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTTCATTTGGC
TGTTCACAAAGCACATCCAGATGTTGTATGCTTATTACTATGTTATAGAGCTAGAGCGGC
TTGTC

consensusID : consensus_7717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 118
fasta sequence

                              [GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGGACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT]

[+] EMBL CD134869             [GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGGACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT]
[+] EMBL CD134864             [GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGGACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT]




>consensus_7717#1
GACATTTGCACCCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTGG
ACTACGTCCTGCTCCACTGCGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7717#0      ---GATTATACGTCTGTTACTCGAACA-TTGTTCATCAACACC-ATGGATAGTAG-ATGA 54
consensus_7717#1      GACATTTGCAC-CCTGGGACTCGTGTACTTGTCCAAGAGCATTTAGAGCTAGTTGCATTG 59
                           **  **  ***  *****   * **** **  * **   *  * **** * **  

consensus_7717#0      GAC-ACAACCCGATGGTTTGACTGCATTACACT-TAGCTTCATTAAATGGAAATATGGAA 112
consensus_7717#1      GACTACGTCCTGCTCCACTG-CGACAAGCCGCTCTAGCTCTATAACATAGTAATAAGCAT 118
                      *** **  ** * *    ** *  **   * ** *****  ** * ** * **** * * 

consensus_7717#0      GCTGTAGATCTTCTTTTGCAAGCGGGCGCTAGTCCAAATCTTGTAGTTCGTCGTCCAGCT 172
consensus_7717#1      ------------------------------------------------------------
                                                                                  

consensus_7717#0      GGCTTGTCTCCATTAAGTGGATGTGATGAAGAAAAATTAGGCTCTGTATTTACACCTCTT 232
consensus_7717#1      ------------------------------------------------------------
                                                                                  

consensus_7717#0      CATTTGGCTGTTCACAAAGCACATCCAGATGTTGTATGCTTATTACTATGTTATAGAGCT 292
consensus_7717#1      ------------------------------------------------------------
                                                                                  

consensus_7717#0      AGAGCGGCTTGTC 305
consensus_7717#1      -------------