cluster # 7723

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Schistosoma mansoni
cluster # 7723 cluster # 7723 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7723#0 length = 585 sequences # 2

consensus_7723#1 length = 454 sequences # 3

consensusID : consensus_7723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 585
fasta sequence

                              [CTGTTGCTAATGCTGCTGTTGATGATCCTGCTGTTGCTAATGCTGCTGTTGATGATCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGGTGATGATGACGATGATGATGATGATGATGATGATGATGATAAGGTGTGGTGCGGATGGAAGCCGTAGAAATGCTAGACGAATTATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATGTTGATGATTTTTATGTGAAACAGTAACTGTAGTCGACGATAAATCATAGTTGGTGGTTGTTTGAGTATGCAATAGTTGACTGACACCAGGAGAATATGATGATATAGTAGTTTTCTGTATAATATTTTCAGCATGTTTTGATGTAGAATTATTTAATTGATAATTTAATCCAGGAGGTTTAAGAGCTGGTGTAGCAGTTGGTGCTGATGCAACATAAGCAGGAAATGGTGTAGGCAATTCATCCATAATACGAATCTCTTCTAAAATTGATTTCGATGTAGATGGATGGTGATGATGATGTGAATTCGTTTTATCAATATTAAGTTTATTATTTAAAGCATTACCATCATTCATGATTGAATGTTC]

[+] EMBL CD059707             [CTGTTGCTAATGCTGCTGTTGATGATCCTGCTGTTGCTAATGCTGCTGTTGATGATCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGGTGATGATGACGATGATGATGATGATGATGATGATGATGATAAGGTGTGGTGCGGATGGAAGCCGTAGAAATGCTAGACGAATTATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATGTTGATGATTTTTATGTGAAACAGTAACTGTAGTCGACGATAAATCATAGTTGGTGGTTGTTTGAGTATGCAATAGTTGACTGACACCAGGAGAATATGATGATATAGTAGTTTTCTGTATAATATTTTCAGCATGTTTTGATGTAGAATTATTTAATTGATAATTTAATCCAGGAGGTTTAAGAGCTGGTGTAGCAGTTGGTGCTGATGCAACATAAGCAGGAAATGGTGTAGGCAATTCATCCATAATACGAATCTCTTCTAAAATTGATTTCGATGTAGATGGATGGTGATGATGATGTGAATTCGTTTTATCAATATTAAGTTTATTATTTAAAGCATTACCATCATTCATGATTGAATGTTC]
[-] EMBL CD193806             [                                                                                                                                                                                     TTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATGTTGATGATTTTTATGTGAAACAGTAACTGTAGTCGACGATAAATCATAGTTGGTGGTTGTTTGAGTATGCAATAGTTG                                                                                                                                                                                                                                                                                                ]




>consensus_7723#0
CTGTTGCTAATGCTGCTGTTGATGATCCTGCTGTTGCTAATGCTGCTGTTGATGATCCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGGTGATGATGACGATGATGATGATG
ATGATGATGATGATGATAAGGTGTGGTGCGGATGGAAGCCGTAGAAATGCTAGACGAATT
ATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATGTTGATGATTTTTATGTGAAAC
AGTAACTGTAGTCGACGATAAATCATAGTTGGTGGTTGTTTGAGTATGCAATAGTTGACT
GACACCAGGAGAATATGATGATATAGTAGTTTTCTGTATAATATTTTCAGCATGTTTTGA
TGTAGAATTATTTAATTGATAATTTAATCCAGGAGGTTTAAGAGCTGGTGTAGCAGTTGG
TGCTGATGCAACATAAGCAGGAAATGGTGTAGGCAATTCATCCATAATACGAATCTCTTC
TAAAATTGATTTCGATGTAGATGGATGGTGATGATGATGTGAATTCGTTTTATCAATATT
AAGTTTATTATTTAAAGCATTACCATCATTCATGATTGAATGTTC

consensusID : consensus_7723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 454
fasta sequence

                              [CCAAATACTCTTGATGATTATAGTTTTCAGTATCTTTTTCATCTTGCTGTTTATCTACACTTTTTAAATCCTTATCTTCATTCAGAAACACTTCTTCAGCATCATCATCAACACCAAGAAAATCAGATTTATGTTCAACATTAGCAGCTGATATTAGAATATTAGCATCATCGTTCTCATTCAAATCGTCATCACCAACTGCTGCTTCCGCGCTAACTGATGAAGAAGTTGATGACGATGACGATGACGTTACAGAACCTCGTGAAGTAGGAGATGACGAATCGGAACTCGACAGAATAGTAGTTTGATGACTTCCTGAAGTCAGATCAGTAGATACCGGATCTAATAAATCTAGTTGACTTGATGAACATGAACTACGTGGTGTTGTAGAAGCAGAAGAAATGCTAGACGAATTATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATG]

[-] EMBL CD162566             [CCAAATACTCTTGATGATTATAGTTTTCAGTATCTTTTTCATCTTGCTGTTTATCTACACTTTTTAAATCCTTATCTTCATTCAGAAACACTTCTTCAGCATCATCATCAACACCAAGAAAATCAGATTTATGTTCAACATTAGCAGCTGATATTAGAATATTAGCATCATCGTTCTCATTCAAATCGTCATCACCAACTGCTGCTTCCGCGCTAACTGATGAAGAAGTTGATGACGATGACGATGACGTTACAGAACCTCGTGAAGTAGGAGATGACGAATCGGAACTCGACAGAATAGTAGTTTGATGACTTCCTGAAGTCAGATCAGTAGATACCGGATCTAATAAATCTAGTTGACTTGATGAACATGAACTACGTGGTGTTGTAGAAGCAGAAGAAATGCTAGACGAATTATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAA   ]
[+] EMBL CD156259             [                                                                   ATCCTTATCTTCATTCAGAAACACTTCTTCAGCATCATCATCAACACCAAGAAAATCAGATTTATGTTCAACATTAGCAGCTGATATTAGAATATTAGCATCATCGTTCTCATTCAAATCGTCATCACCAACTGCTGCTTCCGCGCTAACTGATGAAGAAGTTGATGACGATGACGATGACGTTACAGAACCTCGTGAAGTAGGAGATGACGAATCGGAACTCGACAGAATAGTAGTTTGATGACTTCCTGAAGTCAGATCAGTAGATACCGGATCTAATAAATCTAGT                                                                                                  ]
[+] EMBL CD126278             [                                                                                                                                      TCAACATTAGCAGCTGATATTAGAATATTAGCATCATCGTTCTCATTCAAATCGTCATCACCAACTGCTGCTTCCGCGCTAACTGATGAAGAAGTTGATGACGATGACGATGACGTTACAGAACCTCGTGAAGTAGGAGATGACGAATCGGAACTCGACAGAATAGTAGTTTGATGACTTCCTGAAGTCAGATCAGTAGATACCGGATCTAATAAATCTAGTTGACTTGATGAACATGAACTACGTGGTGATGTAGAAGCAGAAGAAATGCTAGACGAATTATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATG]




>consensus_7723#1
CCAAATACTCTTGATGATTATAGTTTTCAGTATCTTTTTCATCTTGCTGTTTATCTACAC
TTTTTAAATCCTTATCTTCATTCAGAAACACTTCTTCAGCATCATCATCAACACCAAGAA
AATCAGATTTATGTTCAACATTAGCAGCTGATATTAGAATATTAGCATCATCGTTCTCAT
TCAAATCGTCATCACCAACTGCTGCTTCCGCGCTAACTGATGAAGAAGTTGATGACGATG
ACGATGACGTTACAGAACCTCGTGAAGTAGGAGATGACGAATCGGAACTCGACAGAATAG
TAGTTTGATGACTTCCTGAAGTCAGATCAGTAGATACCGGATCTAATAAATCTAGTTGAC
TTGATGAACATGAACTACGTGGTGTTGTAGAAGCAGAAGAAATGCTAGACGAATTATTCG
ACGAGGATCGACGATGCTGCTGTTGTTGTAAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7723#0      CTGTTGCTAATGCTGCTGTTGATGATCCTGCTGTTGCTAATGCTGCTGTTGATGATCCTG 60
consensus_7723#1      -----------------------------------CCAAATACTCTTGATGATTATAGTT 25
                                                          * *** **  ** **** **  * 

consensus_7723#0      CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGATGGTGATGATGACGATGATGATGATG 120
consensus_7723#1      TTCAGTATCTTTTTCATCTTGCTGTTTATCTACACTTTTTAAATCCTTATCTTCATTCAG 85
                       *     *  *  *  *  ***** *  *    *   *    **    **  * **   *

consensus_7723#0      ATGATGATGATGATGATAAGGTGTGGTGCGGATGGAAGCCGTAGAAATGCTAGACGAATT 180
consensus_7723#1      AAACACTTCTTCAGCATCATCATCAACACCAA-GAAAATCAGATTTATGTTCAAC--ATT 142
                      *      *  * *  ** *         *  * * **  *  *   *** *  **  ***

consensus_7723#0      ATTCGACGAGGATCGACGATGCTGCTGTTGTTGTAAATGTT--GATGATTTTTATGTGAA 238
consensus_7723#1      AGCAGCTGATATTAGA--ATATTAGCATCATCGTTCTCATTCAAATCGTCATCACCAACT 200
                      *   *  **   * **  **  *    *  * **     **   **  *  * *      

consensus_7723#0      ACAGTAACTGTAGTCGACGATAAATCATAGTTGGTGGTTGTTTGAGTATGCAATAGTTGA 298
consensus_7723#1      GCTGCTTCCGCGCTAACTGATGAA--GAAGTTGATGACGAT--GACGATGACGTTACAGA 256
                       * *   * *   *    *** **    ***** **    *  **  ***   *    **

consensus_7723#0      CTGACACCAGG-AGAATATGATGATATAGTAGTTTTCTGTATAATATTTTCAGCATGTTT 357
consensus_7723#1      ACCTCGTGAAGTAGGAGATGACGAATCGGAACTCGACAGAATAGTAGTTTGATGACTTCC 316
                          *   * * ** * **** **    * * *   * * *** ** *** *  *  *  

consensus_7723#0      TGATGTAGAATTATTTAATTGATAATTTAATCCAGGAGGTTTAAGAGCTGGTGTAGCAGT 417
consensus_7723#1      TGAAGTCAGATCAGTAGATACCGGATCTAATAAATCTAGTT---GACTTGATG-AACATG 372
                      *** **   ** * *  **     ** ****  *    ***   **  ** ** * **  

consensus_7723#0      TGGTGC-TGATGCAACATAAGCAGGAAATGGTGTAGGCAATTCATCCATAATACGAATCT 476
consensus_7723#1      AACTACGTGGTGTTGTAGAAGCAGAAGAAATGCTAGACGAATTATTCG----ACGAGGAT 428
                         * * ** **    * ****** * *     *** * * * ** *     ****   *

consensus_7723#0      CTTCTAAAATTGATTTCGATGTAGATGGATGGTGATGATGATGTGAATTCGTTTTATCAA 536
consensus_7723#1      CGAC-GATGCTGCTGTTGTTGTAAATG--------------------------------- 454
                      *  *  *   ** * * * **** ***                                 

consensus_7723#0      TATTAAGTTTATTATTTAAAGCATTACCATCATTCATGATTGAATGTTC 585
consensus_7723#1      -------------------------------------------------