cluster # 7724

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Schistosoma mansoni
cluster # 7724 cluster # 7724 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7724#0 length = 756 sequences # 4

consensus_7724#1 length = 317 sequences # 1

consensusID : consensus_7724#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 756
fasta sequence

                              [CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTACGCTACTTCTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTAC-AATCTTAAAACACGCGAAGGCAATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATT-GTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGTTTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCANAACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATATCAATGCAATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT]

[+] EMBL CD180088             [CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTACGCTACTTCTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACCACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGT ATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTACAAATCTAAAc                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD154441             [                                                                                                                                        TGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGATCATGACATGTGCCTATGCGCCTTCCGGTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTAC AATCTTAAAACACGCGAAGGCGATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATT GTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGTTTGGCACCTGATCTACGGACA TTGTTTCAGGAGCTTGTGACGCATCGGC NAACTATGGGATATACGTGATGGTCAATGTANACAAACGTTCACTGGACATGAATCAGAT                                             ]
[+] EMBL CD201498             [                                                                                                                                              CGGTAGGACGAATTCAGTTGCGTACTCGTCGAACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTAC AATCTTAAAACACGCGAAGGCAATGTGCGTGTTAACCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATT GTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTACTTTGGCACCTGATCTACAGACATTTGTTTCAGGAGCTTGTGACGCATCGGCAAAACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCAC                                                             ]
[-] EMBL CD064460             [                                                                                                                                                                                                                                                                                                                                                                                                                                   GCAATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTTCTTGATGACAGTCAAATTGGTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATTGAAACTGGCCTACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGTTTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCATAACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATATCAATGCAATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT]




>consensus_7724#0
CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGT
GAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTACGCTACTT
CTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTCGTACTTTA
CGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCAATCTTGTA
TCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATAAGGTTCAT
GCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCGGTAATTAT
GTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTACAATCTTAAAACACGCGAAGGC
AATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTTGTCGTTTT
CTTGATGACAGTCAAATTGTAACAAGTTCTGGTGATGTGACTTGTGGACTCTGGGATATT
GAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGAGTCTTAGT
TTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCANAACTATGG
GATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATATCAATGCA
ATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT

consensusID : consensus_7724#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAAGTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTCGCATTTTAAAAAAAATTAAACTCTTGAGAATATATAAGTGCCTCAATGTAGTTATTTTTCGATTCAAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCATATTATTTCAATCTCTTCTGAAATCTCTATT]

[+] EMBL CD110958             [TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGCAAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAAGTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTCGCATTTTAAAAAAAATTAAACTCTTGAGAATATATAAGTGCCTCAATGTAGTTATTTTTCGATTCAAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCATATTATTTCAATCTCTTCTGAAATCTCTATT]




>consensus_7724#1
TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGC
AAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAA
GTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTC
GCATTTTAAAAAAAATTAAACTCTTGAGAATATATAAGTGCCTCAATGTAGTTATTTTTC
GATTCAAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCATATTATTTCAATCT
CTTCTGAAATCTCTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7724#0      --------CCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGC 52
consensus_7724#1      TTGGTTGTCCCCGCGATTACCATTTTTCATCCAAAATGAGTGAACTGGATCAGCTACGGC 60
                              ****************************************************

consensus_7724#0      AAGAAAGTGAACAACTCAAAAATATGATCAGGGAGGCCCGCAAAGCTGCAGCTGATACTA 112
consensus_7724#1      AAGAAAGTGAACAACTCAAAAATATGATCAGGGTAAGTCTAAGAGTAAAAAATATCTGAA 120
                      *********************************     *  * **    *  *      *

consensus_7724#0      CGCTACTTCTAGCATCTAGTAACGTGGAGCCGGTAGGACGAATTCAGTTGCGTACTCGTC 172
consensus_7724#1      GTCTGTAATTTCCTTATATCACTTTTAGCCAGATAGTTAATGTCAAGGTATTTTATAGTC 180
                        **     *  * * **  *   *    * * ***      *  ** *   *  * ***

consensus_7724#0      GTACTTTACGGGGTCATTTGGCTAAAATTTATGCTATGCATTGGAGCACTGATTCGCGCA 232
consensus_7724#1      GCATTTTAAAAAA------AATTAAACTCTTGAGAATATATAAGTGCCTCAAT----GTA 230
                      * * ****              **** * *     **  **  * **    **    * *

consensus_7724#0      ATCTTGTATCTGCTTCACAAGATGGCAAACTTATAGTCTGGGATGGGTATACTACTAATA 292
consensus_7724#1      GTTATTTTTCGATTC----AAATTCTGAGTGTTTAATCTTCCTTATCACTATTGCTACCA 286
                       *  * * **   *     * **    *   * ** ***    *     ** * ***  *

consensus_7724#0      AGGTTCATGCCATTCCTCTAAGAAGTAGCTGGGTCATGACATGTGCCTATGCGCCTTCCG 352
consensus_7724#1      TA--TTATTTCAATCTCTTCTGAAATCTCTATT--------------------------- 317
                          * **  ** **   *  *** *  **                              

consensus_7724#0      GTAATTATGTCGCATGCGGTGGTTTGGACAACATTTGTTCCATTTACAATCTTAAAACAC 412
consensus_7724#1      ------------------------------------------------------------
                                                                                  

consensus_7724#0      GCGAAGGCAATGTGCGTGTTAGCCGTGAGCTTCCAGGACATACAGGATATCTGTCATGTT 472
consensus_7724#1      ------------------------------------------------------------
                                                                                  

consensus_7724#0      GTCGTTTTCTTGATGACAGTCAAATTGTAACAAGTTCTGGTGATGTGACTTGTGGACTCT 532
consensus_7724#1      ------------------------------------------------------------
                                                                                  

consensus_7724#0      GGGATATTGAAACTGGCCAACAAGTCGCTACTTTCACAGGTCATACAGGCGATGTAATGA 592
consensus_7724#1      ------------------------------------------------------------
                                                                                  

consensus_7724#0      GTCTTAGTTTGGCACCTGATCTACGGACATTTGTTTCAGGAGCTTGTGACGCATCGGCAN 652
consensus_7724#1      ------------------------------------------------------------
                                                                                  

consensus_7724#0      AACTATGGGATATACGTGATGGTCAATGTAAACAAACGTTCACTGGACATGAATCAGATA 712
consensus_7724#1      ------------------------------------------------------------
                                                                                  

consensus_7724#0      TCAATGCAATTATATTCTTTCCAAGTGCTTTGCTTTTGCGCTGT 756
consensus_7724#1      --------------------------------------------