These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 381 fasta sequence [CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATCCTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAATCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAATAATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT-AAAAAAAAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGAAAAGGCATTAGTTACCAATCA] [+] EMBL CD135371 [CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATCCTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAATCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAATAATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACAGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT AAAAAAAAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGAAAAGGCATTAGTTACCAATCA] [+] EMBL CD192545 [ ACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTTAAAAAAAAAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGGAAAGGCATTAGTTACCAA ] [+] EMBL CD134868 [ ACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT AAGAAAAAACAAAAAAACACAACAACAGAT ] [+] EMBL CD192780 [ ACCGACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTT AAAAAAAAACAAAAAAACACAACAACAGAT ] consensusID : consensus_7725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [TTTTCCAGACCACGCCGCCCCAGCCAGCCTCAAAGGCGCGGACCACGTTGTAGGCCTTGTCGGTCCGTCGCCACGACGGACCGACGGATAATCACAAAAACTATGACATATGTTATGAATGACGTGGGGTTTGTTTTAAAAAAAAATAAAAGAACACAACAACAGAT] [+] EMBL CD134861 [TTTTCCAGACCACGCCGCCCCAGCCAGCCTCAAAGGCGCGGACCACGTTGTAGGCCTTGTCGGTCCGTCGCCACGACGGACCGACGGATAATCACAAAAACTATGACATATGTTATGAATGACGTGGGGTTTGTTTTAAAAAAAAATAAAAGAACACAACAACAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7725#0 CTCTACTAATATGATACGAACTTCCGAGTGACTAACAATAATCAATCGGTTTATTCAATC 60 consensus_7725#1 ------------------------------------------------------------ consensus_7725#0 CTGAAAGGGAATAAGAAATCACAAAGTGGATATATTGACAAACAAGTATAGAGATGATAA 120 consensus_7725#1 ------------------------------------------------------------ consensus_7725#0 TCACATGAATCTAGTAACCAAACCATTTACAAACTATATTCGAAAGACATAACAAATAAT 180 consensus_7725#1 ------------------------TTTTCCAGACCACGCC-----GCCCCAGCCAGCCTC 31 *** ** ** * * * * * * consensus_7725#0 AATAATAAAATACATATTACATCTTGTGATAGATAGACACATAGATAGATAGACAGACCG 240 consensus_7725#1 AA-----AGGCGCGGACCACGTTGTAGGCCTTGTCGGTCCGTCGCCAC---GACGGACCG 83 ** * * * ** * * * * * * * * * *** ***** consensus_7725#0 ACGGATAATCACAAAAACTATGACATATGTCATGAATGACGTCATGTTTGTTTTAAAAAA 300 consensus_7725#1 ACGGATAATCACAAAAACTATGACATATGTTATGAATGACGTGGGGTTTGTTTTAAAAAA 143 ****************************** *********** *************** consensus_7725#0 AAACAAAAAAACACAACAACAGATTGTGCAACTCGATGTTGATTACTCTCAAAAAGTAGA 360 consensus_7725#1 AAATAAAAGAACACAACAACAGAT------------------------------------ 167 *** **** *************** consensus_7725#0 AAAGGCATTAGTTACCAATCA 381 consensus_7725#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||