cluster # 7726

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Schistosoma mansoni
cluster # 7726 cluster # 7726 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7726#0 length = 960 sequences # 4

consensus_7726#1 length = 601 sequences # 1

consensusID : consensus_7726#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 960
fasta sequence

                              [TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCTCAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCTCTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTGGCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATATTTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGG-AGAAGATCTAGCAC-GAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC]

[+] EMBL CD068168             [TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCTCAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD200210             [                                                                         TCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD064497             [                                                                                                                                                                                                                                                                                   tnTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATTCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCTCTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTGGCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATATTTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGG AGAAGATCTAGCAC GAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAA                                                                                                                         ]
[+] EMBL CD114290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gGATTCCTTGGTANAATATCTAGCACGGAAGA TAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC]




>consensus_7726#0
TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCT
CAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGA
GTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGC
GCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTG
AAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAAC
CATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAAC
ATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTT
CAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCT
CTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAG
ATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTG
GCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGG
GAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATAT
TTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGGAG
AAGATCTAGCACGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAAT
TAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTG
ATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC

consensusID : consensus_7726#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGCGAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGATA]

[+] EMBL CD083226             [NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGCGAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGATA]




>consensus_7726#1
NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGC
GAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATT
TCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAAT
GACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGC
GAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAA
CGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGT
TATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTAC
CGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTAC
CGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCA
TGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGAT
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7726#0      TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCT 60
consensus_7726#1      ------------------------------------------------------------
                                                                                  

consensus_7726#0      CAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGA 120
consensus_7726#1      ------------------------------------------------------------
                                                                                  

consensus_7726#0      GTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGC 180
consensus_7726#1      ------------------------------------------------------------
                                                                                  

consensus_7726#0      GCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTG 240
consensus_7726#1      ------------------------------------------------------------
                                                                                  

consensus_7726#0      AAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAAC 300
consensus_7726#1      ------------------------------------------------------------
                                                                                  

consensus_7726#0      CATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAAC 360
consensus_7726#1      -----------------NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGC 43
                                         *     * ***  * **    * ** *           * *

consensus_7726#0      ATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTT 420
consensus_7726#1      CACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTT----CCT 99
                          * *     **   * *  * ****  * ****** *     ** **  *      *

consensus_7726#0      CAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGC--ACGTTGTATTGG 478
consensus_7726#1      GAAAATACAACTTCGGA--GATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTA 157
                       ** **     * ** *  *  *** * **** *   ***   ***  *** ** * *  

consensus_7726#0      CTCTCT----GAGCAATCACAGCTTGTGCA-GTGATGGCAGACGGGTACGTGCGTTACCT 533
consensus_7726#1      TTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTA 217
                       * *      **  * *****      **  *  **   *  * * *    *   *    

consensus_7726#0      GTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTG 593
consensus_7726#1      GCAGTGGGTT-ATCAAATATTAGC--GAATCAAGCAATCA-AGATCCTCCGTTTGTTGTG 273
                      * *** * *  * *   *    **    **   *    ** **** *    * ** * **

consensus_7726#0      ATATCTGGCTCCAAGCGTAATA-TCAATTATGTC-ATTGTTGATTGTCGTTTCCCTTACG 651
consensus_7726#1      ATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTG-CATTTCTTCGAAG 332
                      **** *   * * **  *  *  ****  *  ** *   ***  ** * ****    * *

consensus_7726#0      AATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTC 711
consensus_7726#1      CGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATAT 392
                        *     *     *  ****     *  **  *  * ** * *  * *  *  *  *  

consensus_7726#0      AAGAGATATTTAACCGTGTCC-CTGCGCAAAGACCTCCTGGTACATCTGGACCCC-CACG 769
consensus_7726#1      AATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCG-CATTTATGTACTCCGCAAG 451
                      **   *   *  *   * * *  *   *  * *  *** *  *  * ** ** ** ** *

consensus_7726#0      ATTCCTTGGAGAAGATCTAGCACGAAGATTAG---CTACTACACAGCGGGAGCCACTTTC 826
consensus_7726#1      AATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTA 511
                      * * * *  * * * ** * *  **  *   *   *   ***        *  *   ** 

consensus_7726#0      CGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGA-TGAATTTCCTGAAAATACAA 885
consensus_7726#1      CTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATA 571
                      * *  * **  * ** *      ***      ** **   * **    *****  *   *

consensus_7726#0      CTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAAT 945
consensus_7726#1      AGTCCCANATACCCGTTTCCGAGGTTGATA------------------------------ 601
                        **  * **  * * *** *    *   *                              

consensus_7726#0      AATATTCACAATGAC 960
consensus_7726#1      ---------------