These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 960 fasta sequence [TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCTCAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCTCTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTGGCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATATTTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGG-AGAAGATCTAGCAC-GAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC] [+] EMBL CD068168 [TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCTCAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATT ] [+] EMBL CD200210 [ TCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATT ] [-] EMBL CD064497 [ tnTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATTCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCTCTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTGGCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATATTTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGG AGAAGATCTAGCAC GAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAA ] [+] EMBL CD114290 [ gGATTCCTTGGTANAATATCTAGCACGGAAGA TAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC] consensusID : consensus_7726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGCGAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGATA] [+] EMBL CD083226 [NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGCGAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7726#0 TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCT 60 consensus_7726#1 ------------------------------------------------------------ consensus_7726#0 CAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGA 120 consensus_7726#1 ------------------------------------------------------------ consensus_7726#0 GTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGC 180 consensus_7726#1 ------------------------------------------------------------ consensus_7726#0 GCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTG 240 consensus_7726#1 ------------------------------------------------------------ consensus_7726#0 AAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAAC 300 consensus_7726#1 ------------------------------------------------------------ consensus_7726#0 CATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAAC 360 consensus_7726#1 -----------------NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGC 43 * * *** * ** * ** * * * consensus_7726#0 ATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTT 420 consensus_7726#1 CACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTT----CCT 99 * * ** * * * **** * ****** * ** ** * * consensus_7726#0 CAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGC--ACGTTGTATTGG 478 consensus_7726#1 GAAAATACAACTTCGGA--GATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTA 157 ** ** * ** * * *** * **** * *** *** *** ** * * consensus_7726#0 CTCTCT----GAGCAATCACAGCTTGTGCA-GTGATGGCAGACGGGTACGTGCGTTACCT 533 consensus_7726#1 TTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTA 217 * * ** * ***** ** * ** * * * * * * consensus_7726#0 GTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTG 593 consensus_7726#1 GCAGTGGGTT-ATCAAATATTAGC--GAATCAAGCAATCA-AGATCCTCCGTTTGTTGTG 273 * *** * * * * * ** ** * ** **** * * ** * ** consensus_7726#0 ATATCTGGCTCCAAGCGTAATA-TCAATTATGTC-ATTGTTGATTGTCGTTTCCCTTACG 651 consensus_7726#1 ATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTG-CATTTCTTCGAAG 332 **** * * * ** * * **** * ** * *** ** * **** * * consensus_7726#0 AATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTC 711 consensus_7726#1 CGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATAT 392 * * * **** * ** * * ** * * * * * * * consensus_7726#0 AAGAGATATTTAACCGTGTCC-CTGCGCAAAGACCTCCTGGTACATCTGGACCCC-CACG 769 consensus_7726#1 AATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCG-CATTTATGTACTCCGCAAG 451 ** * * * * * * * * * * *** * * * ** ** ** ** * consensus_7726#0 ATTCCTTGGAGAAGATCTAGCACGAAGATTAG---CTACTACACAGCGGGAGCCACTTTC 826 consensus_7726#1 AATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTA 511 * * * * * * * ** * * ** * * * *** * * ** consensus_7726#0 CGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGA-TGAATTTCCTGAAAATACAA 885 consensus_7726#1 CTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATA 571 * * * ** * ** * *** ** ** * ** ***** * * consensus_7726#0 CTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAAT 945 consensus_7726#1 AGTCCCANATACCCGTTTCCGAGGTTGATA------------------------------ 601 ** * ** * * *** * * * consensus_7726#0 AATATTCACAATGAC 960 consensus_7726#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||