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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 960 fasta sequence
[TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCTCAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCTCTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTGGCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATATTTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGG-AGAAGATCTAGCAC-GAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC]
[+] EMBL CD068168 [TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCTCAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATT ]
[+] EMBL CD200210 [ TCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGAGTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGCGCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTGAAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATT ]
[-] EMBL CD064497 [ tnTAATCCGAATGGTGGTCCGAAACCATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAACATTGTCCAAGTTCTCCTGTAGAAGTATTCAACGATGAAAACTCCAATAAACCTAGAATTTCAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGCACGTTGTATTGGCTCTCTGAGCAATCACAGCTTGTGCAGTGATGGCAGACGGGTACGTGCGTTACCTGTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTGATATCTGGCTCCAAGCGTAATATCAATTATGTCATTGTTGATTGTCGTTTCCCTTACGAATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTCAAGAGATATTTAACCGTGTCCCTGCGCAAAGACCTCCTGGTACATCTGGACCCCCACGATTCCTTGG AGAAGATCTAGCAC GAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAA ]
[+] EMBL CD114290 [ gGATTCCTTGGTANAATATCTAGCACGGAAGA TAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAATAATATTCACAATGAC]
consensusID : consensus_7726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGCGAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGATA]
[+] EMBL CD083226 [NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGCCACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTTCCTGAAAATACAACTTCGGAGATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTATTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTAGCAGTGGGTTATCAAATATTAGCGAATCAAGCAATCAAGATCCTCCGTTTGTTGTGATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTGCATTTCTTCGAAGCGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATATAATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCGCATTTATGTACTCCGCAAGAATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTACTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATAAGTCCCANATACCCGTTTCCGAGGTTGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7726#0 TCCGTGTATTGAGACGCTATTCCCTTCCGCCTGTAGGTGAATCGGGTTCAGGAAGCACCT 60
consensus_7726#1 ------------------------------------------------------------
consensus_7726#0 CAGAAGCCTCACCTCCTAGAGATCATTTAGTCAGCTTTTTAACGTCAACTAAAAGTCCGA 120
consensus_7726#1 ------------------------------------------------------------
consensus_7726#0 GTTTTGAAAAAAGAATGGAATGTTCAAGTTCTTTGCTTCATCCTATACCTAAAAAGCAGC 180
consensus_7726#1 ------------------------------------------------------------
consensus_7726#0 GCATAGAATCACCAAGAGAAATTGATTGTAACTCTACGATACCGACAGAGGAGTTAACTG 240
consensus_7726#1 ------------------------------------------------------------
consensus_7726#0 AAAATTCGGAACATGATAATATTGGATCTTTATTTTCTAATCCGAATGGTGGTCCGAAAC 300
consensus_7726#1 ------------------------------------------------------------
consensus_7726#0 CATTTTTTGAACTCCTGCGTCATCATTCGACTCCAATGCCATCTTCCTATTCATACAAAC 360
consensus_7726#1 -----------------NATTTCGGTCCGAGGCGAAGATTAGCTACTACACAGCGGGAGC 43
* * *** * ** * ** * * *
consensus_7726#0 ATTGTCCAAGTTCTCCTGTAGAAGTATCCAACGATGAAAACTCCAATAAACCTAGAATTT 420
consensus_7726#1 CACTTTCCGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGATGAATTT----CCT 99
* * ** * * * **** * ****** * ** ** * *
consensus_7726#0 CAAGATGTCTTTCCGAAATGCATTCCGTTTCGTACGATGCGATTGC--ACGTTGTATTGG 478
consensus_7726#1 GAAAATACAACTTCGGA--GATTTCTGATTCGGATCTTGCATATGCTAACGATGAAGTTA 157
** ** * ** * * *** * **** * *** *** *** ** * *
consensus_7726#0 CTCTCT----GAGCAATCACAGCTTGTGCA-GTGATGGCAGACGGGTACGTGCGTTACCT 533
consensus_7726#1 TTTTAGAAAAGAATATTCACAATGACAGCCCGAAATCAGAACCAGATCTTAGTTATGTTA 217
* * ** * ***** ** * ** * * * * * *
consensus_7726#0 GTAGTAGATAGAACTGGTTCCGGCCTACATTGCGTTTCCACAGATACGGTCTCTGATCTG 593
consensus_7726#1 GCAGTGGGTT-ATCAAATATTAGC--GAATCAAGCAATCA-AGATCCTCCGTTTGTTGTG 273
* *** * * * * * ** ** * ** **** * * ** * **
consensus_7726#0 ATATCTGGCTCCAAGCGTAATA-TCAATTATGTC-ATTGTTGATTGTCGTTTCCCTTACG 651
consensus_7726#1 ATATTTCATTGCGAGTTTTCTTCTCAACGAGCTCCAGCATTGGCTG-CATTTCTTCGAAG 332
**** * * * ** * * **** * ** * *** ** * **** * *
consensus_7726#0 AATATGAGGGAGGGCACATTAAAGGAGCAATTAACATTTTCACTCACTGTGATCTAGTTC 711
consensus_7726#1 CGTCGATCGTGTTTCGAATTACCATCGTTATCCATTTCTTTATTTTCCGGAAATTTATAT 392
* * * **** * ** * * ** * * * * * * *
consensus_7726#0 AAGAGATATTTAACCGTGTCC-CTGCGCAAAGACCTCCTGGTACATCTGGACCCC-CACG 769
consensus_7726#1 AATGAAAGGTGGATATTCTGCATTTTACCGAAAATTCCCG-CATTTATGTACTCCGCAAG 451
** * * * * * * * * * * *** * * * ** ** ** ** *
consensus_7726#0 ATTCCTTGGAGAAGATCTAGCACGAAGATTAG---CTACTACACAGCGGGAGCCACTTTC 826
consensus_7726#1 AATACGTTAAAATGTTCCACCGGGATTACCGGAATCACTTACGTTTGTATAAACGTCTTA 511
* * * * * * * ** * * ** * * * *** * * **
consensus_7726#0 CGCACCTTGCGAATTAATATCTGATGATGAAGATGAAGA-TGAATTTCCTGAAAATACAA 885
consensus_7726#1 CTCGTCGTGTCAGTTCAGCCTGTATGGCATGCATAAAACCTCAACAAACTGAAGTTGATA 571
* * * ** * ** * *** ** ** * ** ***** * *
consensus_7726#0 CTTCGGAGATTTCTGATTCGGTATCTTGCATATGCTAACGATGAAGTTATTTTACAAAAT 945
consensus_7726#1 AGTCCCANATACCCGTTTCCGAGGTTGATA------------------------------ 601
** * ** * * *** * * *
consensus_7726#0 AATATTCACAATGAC 960
consensus_7726#1 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||