cluster # 7731

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Schistosoma mansoni
cluster # 7731 cluster # 7731 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7731#0 length = 642 sequences # 3

consensus_7731#1 length = 607 sequences # 2

consensusID : consensus_7731#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 642
fasta sequence

                              [TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCACCAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTAGTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATTCAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTTGGGGCCAGTCGACGTGTAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTCGGAGCTTGGGAAAGGCACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTACGAACCGGGTAAGGGTCTTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG]

[+] EMBL CD094979             [TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCACCAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTAGTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATTCAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTTGGGGCCAGTCGACGTGTAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTCGGAGCTTGGGAAAGGCACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTACGAACCGGGTAAGGGTCTTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG]
[-] EMBL CD180834             [                                                                         GTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCA                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD130982             [                                                                                                                                                                                                                          GAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTAGTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATTCAGATATCTATCGT                                                                                                                                                                                                                ]




>consensus_7731#0
TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCAC
CAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAA
AGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATT
CTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGG
GTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTA
GTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACG
ACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATT
CAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTTGGGGCCAGTCGACGTG
TAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTCGGAGCTTGGGAAAGGC
ACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTACGAACCGGGTAAGGGTC
TTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG

consensusID : consensus_7731#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 607
fasta sequence

                              [TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAAAATAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATAAATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACGCATCGCATTTTTCGCTTATTTGAAGTTGTATGAATTTATTAGGTTGCAGTAAAGGTACCTGGAGTAGGAATACCCGTTGTTTAGCTGTAATGTTTTAACAGAAAACCTGTAGACTGTCAAAATAATCAAGTAGTTTAGTTGTAAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTGTGTTAAACATGCATTTGTCATATGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTCTCATTTG]

[+] EMBL CD199767             [TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAAAATAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATAAATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACGCATCGCATTTTTCGCTTATTTGAAGTTGTATGAATT                                                                                                                                                                                                                   ]
[-] EMBL CD066171             [                                                              ACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAAAACAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATAGATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACGCATCGCATTCTTCGCTTATTTGAGGTTGTATGAATTTATTAGGTTGCAGTAAAGGTACCTGGAGTAGGAATACCCGTTGTTTAGCTGTAATGTTTTAACAGAAAACCTGTAGACTGTCAAAATAATCAAGTAGTTTAGTTGTAAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTGTGTTAAACATGCATTTGTCATATGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTCTCATTTG]




>consensus_7731#1
TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAG
AAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGT
GGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATC
ACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAA
AATAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATA
AATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACG
CATCGCATTTTTCGCTTATTTGAAGTTGTATGAATTTATTAGGTTGCAGTAAAGGTACCT
GGAGTAGGAATACCCGTTGTTTAGCTGTAATGTTTTAACAGAAAACCTGTAGACTGTCAA
AATAATCAAGTAGTTTAGTTGTAAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTG
TGTTAAACATGCATTTGTCATATGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTC
TCATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7731#0      TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCAC 60
consensus_7731#1      ------------------------------------------------------------
                                                                                  

consensus_7731#0      CAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAA 120
consensus_7731#1      -----------------------TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAA 37
                                             *************************************

consensus_7731#0      AGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATT 180
consensus_7731#1      AGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATT 97
                      ************************************************************

consensus_7731#0      CTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGG 240
consensus_7731#1      CTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGG 157
                      ************************************************************

consensus_7731#0      GTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGG---TGCCG 297
consensus_7731#1      GTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTT 217
                      ************************************************ ***   *    

consensus_7731#0      GTAGTTCCTCTGGTCCGAAAGAAACTAACGAAG---------AAGCTGAC----CAGATT 344
consensus_7731#1      ATGTTAAGGAAGGCTAGGTGAAAAATAATGAGGTTCATCGACAAGCTAACGATTCATTGT 277
                       *  *      **   *    *** *** ** *         ***** **    **   *

consensus_7731#0      TCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGAT 404
consensus_7731#1      TCTCAACTCCTATGCTGTGAATAAATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAAT 337
                      **  *      *  *    ***   **** *** ****  **  **   *   **   **

consensus_7731#0      TCTGACTCACCAAATTCAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTT 464
consensus_7731#1      AGTTACGTCTCTG-CTTAGTTACGCATCGCATTTTTCGCTTATTTGAAGTTGTAT----- 391
                        * **    *    * ** **   **** *    *  *     **    * ***     

consensus_7731#0      GGGGCCAGTCGACGTGTAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTC 524
consensus_7731#1      -GAATTTATTAGGTTGCAGTAAAGGTACCTGGAGTAGGAATACC--CGTTGTTTAGCTGT 448
                       *      *     ** ** *   *   *** **  *  *   *  **   * * * *  

consensus_7731#0      GGAGCTTGGGAAAGGCACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTAC 584
consensus_7731#1      AATGTTTTAACAGAAAACCTGTAGACTGTCAAAATAA------TCAAGTAGTTTAGTTGT 502
                         * **    *    **  * *   * *   *** *      *  ** ** *  ***  

consensus_7731#0      GAACCGGGTAAGGGTCTTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG-- 642
consensus_7731#1      AAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTGTGTTAAACATGCATTTGTCATA 562
                       *    ***  **   **  ** **   ** *  *   *****  *  *     *     

consensus_7731#0      ---------------------------------------------
consensus_7731#1      TGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTCTCATTTG 607