These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence [TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCACCAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTAGTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATTCAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTTGGGGCCAGTCGACGTGTAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTCGGAGCTTGGGAAAGGCACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTACGAACCGGGTAAGGGTCTTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG] [+] EMBL CD094979 [TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCACCAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTAGTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATTCAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTTGGGGCCAGTCGACGTGTAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTCGGAGCTTGGGAAAGGCACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTACGAACCGGGTAAGGGTCTTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG] [-] EMBL CD180834 [ GTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCA ] [-] EMBL CD130982 [ GAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGGTGCCGGTAGTTCCTCTGGTCCGAAAGAAACTAACGAAGAAGCTGACCAGATTTCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGATTCTGACTCACCAAATTCAGATATCTATCGT ] consensusID : consensus_7731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAAAATAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATAAATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACGCATCGCATTTTTCGCTTATTTGAAGTTGTATGAATTTATTAGGTTGCAGTAAAGGTACCTGGAGTAGGAATACCCGTTGTTTAGCTGTAATGTTTTAACAGAAAACCTGTAGACTGTCAAAATAATCAAGTAGTTTAGTTGTAAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTGTGTTAAACATGCATTTGTCATATGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTCTCATTTG] [+] EMBL CD199767 [TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAAAGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAAAATAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATAAATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACGCATCGCATTTTTCGCTTATTTGAAGTTGTATGAATT ] [-] EMBL CD066171 [ ACAAACAGTATACGGGATTTTCGCCTCAGATGATTCTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGGGTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTTATGTTAAGGAAGGCTAGGTGAAAAACAATGAGGTTCATCGACAAGCTAACGATTCATTGTTCTCAACTCCTATGCTGTGAATAGATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAATAGTTACGTCTCTGCTTAGTTACGCATCGCATTCTTCGCTTATTTGAGGTTGTATGAATTTATTAGGTTGCAGTAAAGGTACCTGGAGTAGGAATACCCGTTGTTTAGCTGTAATGTTTTAACAGAAAACCTGTAGACTGTCAAAATAATCAAGTAGTTTAGTTGTAAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTGTGTTAAACATGCATTTGTCATATGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTCTCATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7731#0 TAAACTGGCGCGCGCAACGTTTTAAAGTCATCGGATTTGTTGGAATTATGGGGTCGTCAC 60 consensus_7731#1 ------------------------------------------------------------ consensus_7731#0 CAGGGATGGAGAGGTTTGGTCTGTCTGATGTGGAATATTCGTTCATGATGGATCCTTTAA 120 consensus_7731#1 -----------------------TCTGATGTGGAATATTCGTTCATGATGGATCCTTTAA 37 ************************************* consensus_7731#0 AGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATT 180 consensus_7731#1 AGCGACGCCCGAAACAATCAAAGAAACAAACAGTATACGGGATTTTCGCCTCAGATGATT 97 ************************************************************ consensus_7731#0 CTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGG 240 consensus_7731#1 CTGATTCAGAGCCTGAAAGAAGTGGCTTCGGTGGACGTGAAGGTGGTTTCAAGCGTAAGG 157 ************************************************************ consensus_7731#0 GTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGCAGG---TGCCG 297 consensus_7731#1 GTGCCAATTATTCAGCACCGATCACCTTTGTCAGTGGTGGAGTGAAGGTAGGGTATATTT 217 ************************************************ *** * consensus_7731#0 GTAGTTCCTCTGGTCCGAAAGAAACTAACGAAG---------AAGCTGAC----CAGATT 344 consensus_7731#1 ATGTTAAGGAAGGCTAGGTGAAAAATAATGAGGTTCATCGACAAGCTAACGATTCATTGT 277 * * ** * *** *** ** * ***** ** ** * consensus_7731#0 TCGGATGATGAAGACGACAAATCTGTTCTAAGGAGTTTGCATCCTTATCATGATTCAGAT 404 consensus_7731#1 TCTCAACTCCTATGCTGTGAATAAATTCTTAGGTGTTTCAATTATTTGAAATGTTGCAAT 337 ** * * * *** **** *** **** ** ** * ** ** consensus_7731#0 TCTGACTCACCAAATTCAGATATCTATCGTAAACCTGACAAGCCTGCGAGTATATCTGTT 464 consensus_7731#1 AGTTACGTCTCTG-CTTAGTTACGCATCGCATTTTTCGCTTATTTGAAGTTGTAT----- 391 * ** * * ** ** **** * * * ** * *** consensus_7731#0 GGGGCCAGTCGACGTGTAGCAGCAGCCGCTGCAGCGGCGAAGTCAGCGACCTCTGGTTTC 524 consensus_7731#1 -GAATTTATTAGGTTGCAGTAAAGGTACCTGGAGTAGGAATACC--CGTTGTTTAGCTGT 448 * * ** ** * * *** ** * * * ** * * * * consensus_7731#0 GGAGCTTGGGAAAGGCACACGAAAGGTATTGGAATGAAACCTTTGGAGCAGATGGGTTAC 584 consensus_7731#1 AATGTTTTAACAGAAAACCTGTAGACTGTCAAAATAA------TCAAGTAGTTTAGTTGT 502 * ** * ** * * * * *** * * ** ** * *** consensus_7731#0 GAACCGGGTAAGGGTCTTGGTTCTGACGGTCGGNGTATTGTTACCCCGGTTCAAGCTG-- 642 consensus_7731#1 AAGGAAGGTCTGGCGATTATTTTTGCGCGTAGTTGCTGTGTTAAACATGCATTTGTCATA 562 * *** ** ** ** ** ** * * ***** * * * consensus_7731#0 --------------------------------------------- consensus_7731#1 TGTTTGTTTCGTCCATTTATTCAACTAATTTGCAAGTCTCATTTG 607 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||