cluster # 7740

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Schistosoma mansoni
cluster # 7740 cluster # 7740 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7740#0 length = 351 sequences # 1
consensus_7740#1 length = 323 sequences # 1

consensus_7740#2 length = 245 sequences # 1
consensus_7740#3 length = 194 sequences # 2

consensusID : consensus_7740#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [ATAGTGCACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGTTTCAGTTTGGAAAGGACAGGAGGCTAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTCTGTGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA]

[+] EMBL SM884                [ATAGTGCACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGTTTCAGTTTGGAAAGGACAGGAGGCTAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTCTGTGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA]




>consensus_7740#0
ATAGTGCACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGTGCAGATG
TAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTT
ATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGTTTCAGTTTGGAAAGGACAGGAG
GCTAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGT
GATGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTC
TGTGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA

consensusID : consensus_7740#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTAACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTGAACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGGTTGGATCATCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTTTCAATC]

[+] EMBL CD188903             [AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTAACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTGAACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGTGCAGATGTAAAAAAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGGTATGCCAGGTTGGATCATCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTTTCAATC]




>consensus_7740#1
AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTA
ACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTG
AACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGTGCAGATGTAAAAAA
ATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTA
CGAAGAAGTACCAGGCTGATGGTATGCCAGGTTGGATCATCTTCTAAATATATCTTTCAA
CTCCTTAAGTATATGTTTCAATC

consensusID : consensus_7740#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [GCAGATGTAAAAAATCCCTAAAATCAATAGCTCTGTAAGTGTTCTACATTGGATGCTGACGACATTAGTTCTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGCTATGCCAGGTTGGATCACTCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATGACTGGAAAAACGCCATACTAAGCC]

[+] EMBL CD088514             [GCAGATGTAAAAAATCCCTAAAATCAATAGCTCTGTAAGTGTTCTACATTGGATGCTGACGACATTAGTTCTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCAGGCTGATGCTATGCCAGGTTGGATCACTCTTCTAAATATATCTTTCAACTCCTTAAGTATATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATGACTGGAAAAACGCCATACTAAGCC]




>consensus_7740#2
GCAGATGTAAAAAATCCCTAAAATCAATAGCTCTGTAAGTGTTCTACATTGGATGCTGAC
GACATTAGTTCTAATGGTATCTTCAAAGGTCTGTGTGCTTATCATTACGAAGAAGTACCA
GGCTGATGCTATGCCAGGTTGGATCACTCTTCTAAATATATCTTTCAACTCCTTAAGTAT
ATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATGACTGGAAAAACGCCATACT
AAGCC

consensusID : consensus_7740#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 194
fasta sequence

                              [AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTAAGTTGTCCTAGGCTTTTGTACTTTTTT-TAGAATGTCTTTGCGAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTTTATTTGATTTATTTC]

[+] EMBL CD146286             [AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTAAGTTGTCCTAGGCTTTTGTACTTTTTT TAGAATGTCTTTGCGAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTTTATTTGATTTATTTC]
[+] EMBL CD146346             [AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGCTAGTCAGCTGACAAGTAAGTTGTCCTAGGCTTTTGTACTTTTTTCTAGAA                                                                                                      ]




>consensus_7740#3
AGGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTA
AGTTGTCCTAGGCTTTTGTACTTTTTTTAGAATGTCTTTGCGAATTATCTGCTTCAGAAG
ACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTTT
ATTTGATTTATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7740#0      ------------------------------------------------------------
consensus_7740#3      ------------------------------------------------------------
consensus_7740#1      AAAAATCAAGATGTTTGATTAGACAATTTAGGTTGTTGACGAATAAGACTAACTGTATTA 60
consensus_7740#2      ------------------------------------------------------------
                                                                                  

consensus_7740#0      ------------------------------------------------------ATAGTG 6
consensus_7740#3      -----------------------------------------------------------A 1
consensus_7740#1      ACTGAAGTATTTGCAAAGCCTCGTAATAAAGGTTCACATAAGATTCTGATTTGTGTATTG 120
consensus_7740#2      ------------------------------------------------------------
                                                                                  

consensus_7740#0      CACAGTAGGTCAGNTAACCTGGNTTATCAATGAGGNAATTGTAAGGT-GCAGATGTAAAA 65
consensus_7740#3      GGTGATGAATTCCATTAGCTGATGATTCTATGGGAAAGTCGTTAGTCAGCTGACAAGTAA 61
consensus_7740#1      AACACAGCAGGCCAAAAACCTGGATTATCAATGAGGAATTGAAGGT--GCAGATGTAAAA 178
consensus_7740#2      ---GCAG-ATGTAAAAAATCCCTAAAATCAATA--GCTCTGTAAGT--GT---TCTACAT 49
                                      *            *          *   *   *         * 

consensus_7740#0      AAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCAT 125
consensus_7740#3      GTTGTCCTAGGCTTTTGTACTTTTTTTAG-AATGTCTTTGCGAAT-TATCTGCTTCAGAA 119
consensus_7740#1      AAATCCCTAAAATCAATAGCTCTTTTTAATGGTATCTTCAAAGGTCTGTGTGCTTATCAT 238
consensus_7740#2      TGGATGCTGACGACATTAGTTCT----AATGGTATCTTCAAAGGTCTGTGTGCTTATCAT 105
                            **            * *    *    * ****      * * * *****   * 

consensus_7740#0      TACGAAGAAGTACCAGGCTGAT--GGTATGCCAGTT-TCAGTTTGGAAAGGACAGGAGGC 182
consensus_7740#3      GACAAGCAAAATAAGGGCGAGTCAGGTGCAGTGATTATCGGATGACAGTAATTAAATTTT 179
consensus_7740#1      TACGAAGAAGTACCAGGCTGAT--GGTATGCCAGGT--TGGATCA-TCTTCTAAATATAT 293
consensus_7740#2      TACGAAGAAGTACCAGGCTGAT--GCTATGCCAGGT--TGGATCACTCTTCTAAATATAT 161
                       ** *  **      ***   *  * *        *    * *          *      

consensus_7740#0      TAGNTGATCCAACTTTCGAGAGCGCCGACAGGTGGAGCTTCAATCATTTGGTTGAGGTGA 242
consensus_7740#3      TATTTGATTTATTTC--------------------------------------------- 194
consensus_7740#1      CTTTCAACTCCTTAAGTATATGTTTCAATC------------------------------ 323
consensus_7740#2      CTTTCAACTCCTTAAGTATATGTCTCAATCTATCCGTAACCCAGGATCGTTTTCCGAATG 221
                            *                                                     

consensus_7740#0      TGAATTCCATTAGCTGATGATTCTATGGGAAAAGTCGTTAGNCAGCTGACAAAATGTCTG 302
consensus_7740#3      ------------------------------------------------------------
consensus_7740#1      ------------------------------------------------------------
consensus_7740#2      ACTGGAAAAACGCCATACTAAGCC------------------------------------ 245
                                                                                  

consensus_7740#0      TGGCGCAATTATCTGCTTCAGAAGACAAGCAAAATAAGGGCGAGTCAGA 351
consensus_7740#3      -------------------------------------------------
consensus_7740#1      -------------------------------------------------
consensus_7740#2      -------------------------------------------------