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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1097 fasta sequence
[TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTGTGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAAATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCA-GGTGTACCATTATTGCTATTGCT-GGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTACTCGTTCTATTAATTCTG]
[-] EMBL CD169327 [TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTGTGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAAATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAACTGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTAACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCT ]
[+] EMBL CD128794 [ CAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGATGCAATGGTACTTTTTGGCATATTCGAATTTGCTTGAACTAAACCAG AACATTTGGAGTTGCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTTGTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGTGTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTGGGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACATAATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGCATTAACTGATGTGGAAAAATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCA GGTGTACCATTATTGCTATTGCT GGCTGAAGGTACTTGAGTG ]
[-] EMBL CD181502 [ CGTTAGACAGAGACAGATTNCGATTAAAGTCTG TACTACAG TTCANGGTGTACCATTATTGCTA TGCTGGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCGAAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTTGTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTCTAATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACTGAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAAATTACTCGTTCTATTAATTCTG]
consensusID : consensus_7743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence
[TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGAACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGAAGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATCTCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATATTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATGAATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGAGTCGATT]
[+] EMBL CD183476 [TTGTGGGAGATCTTTTGCTTTATCGCTTACTGAAGTGTTATTATTTGATGTTCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACATGTGAGATCAATAGCTCCAGTATCTAAAGAACATAGTCGATATAAGCATTCAGTCACGTCAATTTGAATAAGACGTGAAAGTATTTGAGAAGTTTTACTCAATTCCCGAGATAAATTTAAAATGCGGCCACAAGCAGATTCACGATCATCTCGATCATGTAACGGTTCAATTGCGGAGTAGTATGGTCTGGCAGTTATACTGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCG ]
[+] EMBL CD183579 [ TGAATTCAATTTTACCATGTCTAGAAGTACCACAATTAGCGCACAAATATACATCTTCATTACTTAGATTTAGAGAGCGACAACGAAAGCATTCATTCACATTACTATGACACATTATGCATGTACTACCTTGTAAATCAGATGAATGACATCGTGGACAAATACGACGATCTTCTTGACCGGTAGAATGAAAATCTGCATATTCAAAAACGAAACGCGATGCTCGAATAGGTAGGCCAGGTGTTTGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTAGCATATTCTTGATTTGAAGCTAACCAGATTGGAATAGGTGATGGATGTGAAAAACATATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGTCATAATTGTGGTTCATGAATTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAATGTTTTAACATATCTAGGACGTTTTGATAAGACATTAAACTAAATGTTTTTGTAATCGGANAAAAAAGAGTCGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7743#0 TATTCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTACTGGTTGCCATAATTG 60
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 TGGTTCATGAGTTAGTCTTGCTGAAGCACGATCAGTCAGATCACATGTATACACATTCAA 120
consensus_7743#1 -----------------TTGTGGGAG-ATCTTTTGCTTTATCGCTTACTGAAGTGTT--A 40
*** * ** * * * *** * * * ** *
consensus_7743#0 TGTTTTAACATATCTAG--GACGTTTTGATAAGACATTAAACTTGACTGTAATTTGTGAA 178
consensus_7743#1 TTATTTGATGT-TCCAGTTGAATTCTTGGAAGTAAGTGAGTCTTGTATACA---TGTGAG 96
* *** * * ** ** ** * *** * * * * **** * * *****
consensus_7743#0 ATTAAATAACTACCTTCAAGATCGAAAATGTGAACCGAAGAAGTAGAACGGCATTTTAAC 238
consensus_7743#1 ATCAA-----TAGCTCCAGTATCTAAAGAAC--ATAGTCGATATA-AGCATTCAGTCACG 148
** ** ** ** ** *** *** * * ** ** * * * *
consensus_7743#0 TGAACTGGAATCATAAGTGAAAATGGATTTGATGGAGCTCCAGCAGCTCCACTAGCATTA 298
consensus_7743#1 TCAATTTGAATAAGACGTGAAAGT--ATTTGA-GAAGTTTTACTCAATTCCCGAGATAAA 205
* ** * **** * * ****** * ****** * ** * * * * * ** *
consensus_7743#0 ACACCACCACTACCAGAAGTAGCTGTTGTTGTTGTTGTTGTTGTACTGGAAGTTGTTGAT 358
consensus_7743#1 TTTAAAATGCGGCCACAAGCAGAT-TCACGATCATCTCGATCATGTAACGGTTCAATTGC 264
* * *** *** ** * * * * * * * *
consensus_7743#0 GCAATGGTACCTTTTGGCATATTCGAGTTTGCTTGAACTAAACCAGAAACATTTGGAGTT 418
consensus_7743#1 GGAGTAGTATGGTCTGGCAG--TTATACTGAATTCAATTTTACC----ATGTCTAGAAGT 318
* * * *** * ***** * * ** ** * *** * * * ** *
consensus_7743#0 GCAGTAGTTGATGTCAATGGAATATCTGTCCCATTAGCTCTAATATTTGACTGTTGCGTT 478
consensus_7743#1 ACCACAATTAGCGCACA---AATATACATCTTCATTACTTAGAT-TTAGAGAGCGACAAC 374
* * ** * * ***** ** * ** ** ** ** * *
consensus_7743#0 GTAGTACGTTGAGGATTTTGTGATAATAAATTTCCGATAGGTGATTGTCTAAACTGATGT 538
consensus_7743#1 GAA--------AGCATTCATTCACATTA---CTATGACACATTAT-GCATGTACTACCTT 422
* * ** *** * * * ** * ** * * ** * * *** *
consensus_7743#0 GTAAATCGACTATTATAAATGGTAGACACCACAGATTGAATTGAACGCCTTGATACACTG 598
consensus_7743#1 GTAAATCAGATGAATGACATCGTGGACA------AATACGACGATCTTCTTGAC-CGGTA 475
******* * * ** ** **** * * ** * ***** * *
consensus_7743#0 GGTTCAGAATCCCAACGAAAGATAACATAAAATGGTTCATCGATAACTTTAGCATGACAT 658
consensus_7743#1 GAATGAAAATCTGCATATTCANAAACTAAACGCGATGCTCGAATAGGTAGGCCAGGTGTT 535
* * * **** * *** ** * * * *** * ** * *
consensus_7743#0 AATAAACAAGGTTCCAATTCAAATGTGAAAGGAGAATTTGAAGC-ATTAACTGATGTGGA 717
consensus_7743#1 TGTTTTAAATTTAATGAGTCGATTACCAAGTCTGGATCCATTGTTATTCGTTTATCTGTA 595
* ** * * ** * * ** * ** * *** * ** ** *
consensus_7743#0 AAA-ATCGTTAGACAGAGACAGATTACGATTAAAGTCTGTTACTACAGTTTCAGGTGTAC 776
consensus_7743#1 GCATATTCTTGATTTGAAGCTAACCA-GATTGGAATAGGTGATGGATGTGAAAAACATAT 654
* ** ** ** * * * **** * * ** * ** * **
consensus_7743#0 CATTATTGCTATTGCTGGCTGAAGGTACTTGAGTGGTATTTGGTTTTGAGNCTGCAATCG 836
consensus_7743#1 TCTAGCCACTGTTTGATTCCGACTAAATCGAACTGATGCTA---CTGGTTGTCATAATTG 711
* ** ** * ** * * ** * * * * *** *
consensus_7743#0 AAGCCCATGAACGAGATGTGGACGATGAAGCAGTCGTCATGGTGGTGGTTTTATTGGGTT 896
consensus_7743#1 TGGTTCATGAATTAGTCTTG----CTGAAGCA-CGATCAGTCAGATCACATGTATACACA 766
* ****** ** ** ******* *** * * * *
consensus_7743#0 GTGAAAATGTGAATCCATTTACGACTCGGTCCAATGACTCACTTCGTTCAACGGATTC-T 955
consensus_7743#1 TTCAATGTTTTAACATATCTAGGAC--GTTTTGATAAGACATTAAACTAAATGTTTTTGT 824
* ** * * ** ** ** *** * * ** * ** * * ** * ** *
consensus_7743#0 AATGGAATAAATACACCGGGTAGAAGTCCTTTTTGGGAATGAGCAAGGTTCATAAGCACT 1015
consensus_7743#1 AATCGGANAAAAA---AGAGTCGATT---------------------------------- 847
*** * * *** * * ** **
consensus_7743#0 GAATAAAGCGTACGATTAGGATGACGTTTTAATGCTTCAAGACGTTGCATTAAAATCCAA 1075
consensus_7743#1 ------------------------------------------------------------
consensus_7743#0 ATTACTCGTTCTATTAATTCTG 1097
consensus_7743#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||