cluster # 7747

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Schistosoma mansoni
cluster # 7747 cluster # 7747 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7747#0 length = 716 sequences # 4

consensus_7747#1 length = 195 sequences # 1

consensusID : consensus_7747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 716
fasta sequence

                              [AACGGACATACAAAAGGCCCGTAGAAAAGCAATAGACTAACAAAAAGTCGAGAAATAAGTCAATTCGTAATACTTAACAGGGATCACAATATTAAAGCAGAAAATATTTAAACTATTTCCCTTTTCCAAGTAATGTGGTTTTCGCTTCGTTATTTAAACCACTACGAGGTTTCGCGTCGACGAAGTTATCATCACT------ATCATCATCATCATCATCATCGTACCAAGATTCAACGTGTTCTTTATCAAGATCCAGTTGATCGTTATTGTTATTCTCCTCCTCGTTGTTGTCGTCGTCATCATCATCAATATCTTCGTCCAACTGNTGGTCATCTTCTTCCTCCTCCTCTTCATCTTCTTCCTCATCTCCAATCAACTTGACCGAGTCTAATTCACTATCTCCAGAATCATTTCGATTATTACTTTTCGATTGTAGTATTGTTGAAGCGACAACAACAGGTGATGAAATAGTTTCTTGTTGTTGTTCCTCAATGGTTGGTACATAGTCGTCATGACTAATAGTAGTTGTTGGAATTAAGTTAGCATTAAACGGTAAGTTATCATCAAATAATGATGGTTGCATGGGGATAGGTTTATTTTGCATTTCAGCATGAAGATCACGATCACCTGGTAATTGTTGAGTTGGATAAGCTGAAGCAGGTAAATTTAAACGTGCTTCTCTATCACCTTTTAACCATTTTTCTGTAGATAAAGCCTCC]

[-] EMBL CD202588             [AACGGACATACAAAAGGCCCGTAGAAAAGCAATAGACTAACAAAAAGTCGAGAAATAAGTCAATTCGTAATACTTAACAGGGATCACAATATTAAAGCAGAAAATATTTAAACTATTTCCCTTTTCCAAGTAATGTGGTTTTCGCTTCGTTATTTAAACCACTACGAGGTTTCGCGTCGACGAAGTTATCATCACTATCATCATCATCATCATCATCATCATCGTACCAAGATTCAACGTGTTCTTCATCAAGATCCAGTTGATCGTTATTGTTATTCTCCTCCTCGTTGTTGTCGTCGTCATCATCATCAATATCTTCGTCCAACTGNTGGTCATCTTCTTCCTCCTCCTCTTCATCTTCTTCCTCATC                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD130359             [                                                 aAGAAATAAGTCAATTCGTAATACATAACAGGGATCACAATATTAAAGCAGAAAATATTTAAACTATTTCCCTTTTCCAAGTAATGTGGTTTTCGCTTCGTTATTTAAACCACTACGAGGTTTCGCGTCGACGAAGTTATCATCACT      ATCATCATCATCATCATCATCGTACCAAGATTCAACGTGTTCTTTATCAAGATCCAGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD157197             [                                                                                                                                                                                                                         ATCATCGTACCAAGATTCAACGTGTTCTTTATCAAGATCCAGTTGATCGTTATTGTTATTCTCCTCCTCGTTGTTGTCGTCGTCATCATCATCAATATCTTCGTCCAACTCTTCTTCATCTTCTTCCTCCTCCTCTTCATCTTCTTCCTCATCTCCAATCAACTTGACCGAGTCTAATTCACTATCTCCAGAATCATTTCGATTATTACTTTTCGATTGTAGTATTGTTGAAGCGACAACAACAGGTGATGAAATAGTTTCTTGTTGTTGTTCCTCAATGGTTGGTACATAGTCGTCATGACTAATAGTAGTTGTTGGAATTAAGTTAGCATTAAACGGTAAGTTATCATCAAATAATGATGGTTGCATGGGGATA                                                                                                                                 ]
[+] EMBL CD119859             [                                                                                                                                                                                                                                                                                                                                                                            CTCATCTCCAATCAACTTGACCGAGTCTAATTCACTATCTCCAGAATCATTTCGATTATTACTTTTCGATTGTAGTATTGTTGAAGCGACAACAACAGGTGATGAAATAGTTTCTTGTTGTTGTTCCTCAATGGTTGGTACATAGTCGTCATGACTAATAGTAGTTGTTGGAATTAAGTTAGCATTAAACGGTAAGTTATCATCAAATAATGATGGTTGCATGGGGATAGGTTTATTTTGCATTTCAGCATGAAGATCACGATCACCTGGTAATTGTTGAGTTGGATAAGCTGAAGCAGGTAAATTTAAACGTGCTTCTCTATCACCTTTTAACCATTTTTCTGTAGATAAAGCCTCC]




>consensus_7747#0
AACGGACATACAAAAGGCCCGTAGAAAAGCAATAGACTAACAAAAAGTCGAGAAATAAGT
CAATTCGTAATACTTAACAGGGATCACAATATTAAAGCAGAAAATATTTAAACTATTTCC
CTTTTCCAAGTAATGTGGTTTTCGCTTCGTTATTTAAACCACTACGAGGTTTCGCGTCGA
CGAAGTTATCATCACTATCATCATCATCATCATCATCGTACCAAGATTCAACGTGTTCTT
TATCAAGATCCAGTTGATCGTTATTGTTATTCTCCTCCTCGTTGTTGTCGTCGTCATCAT
CATCAATATCTTCGTCCAACTGNTGGTCATCTTCTTCCTCCTCCTCTTCATCTTCTTCCT
CATCTCCAATCAACTTGACCGAGTCTAATTCACTATCTCCAGAATCATTTCGATTATTAC
TTTTCGATTGTAGTATTGTTGAAGCGACAACAACAGGTGATGAAATAGTTTCTTGTTGTT
GTTCCTCAATGGTTGGTACATAGTCGTCATGACTAATAGTAGTTGTTGGAATTAAGTTAG
CATTAAACGGTAAGTTATCATCAAATAATGATGGTTGCATGGGGATAGGTTTATTTTGCA
TTTCAGCATGAAGATCACGATCACCTGGTAATTGTTGAGTTGGATAAGCTGAAGCAGGTA
AATTTAAACGTGCTTCTCTATCACCTTTTAACCATTTTTCTGTAGATAAAGCCTCC

consensusID : consensus_7747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [TAAATATTTCCTGCTTTAATATGGTGATCCCTGTTATGTATTACGAATTGACTTATTCCTTGACTTTTGGTAAGTCTATGGTTTTTTTGGTGGTCTTTTGTATGTCCGTTTGTATACTGGCTTGTTTACTATTTTTGGTTGTCAATGAGGTGGTTATGCAGTCTAACACCCATTATATACATATTATACACGTGT]

[+] EMBL AA958307             [TAAATATTTCCTGCTTTAATATGGTGATCCCTGTTATGTATTACGAATTGACTTATTCCTTGACTTTTGGTAAGTCTATGGTTTTTTTGGTGGTCTTTTGTATGTCCGTTTGTATACTGGCTTGTTTACTATTTTTGGTTGTCAATGAGGTGGTTATGCAGTCTAACACCCATTATATACATATTATACACGTGT]




>consensus_7747#1
TAAATATTTCCTGCTTTAATATGGTGATCCCTGTTATGTATTACGAATTGACTTATTCCT
TGACTTTTGGTAAGTCTATGGTTTTTTTGGTGGTCTTTTGTATGTCCGTTTGTATACTGG
CTTGTTTACTATTTTTGGTTGTCAATGAGGTGGTTATGCAGTCTAACACCCATTATATAC
ATATTATACACGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7747#0      AACGGACATACAAAAGGCCCGTAGAAAAGCAATAGACTAACAAAAAGTCGAGAAATAAGT 60
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      CAATTCGTAATACTTAACAGGGATCACAATATTAAAGCAGAAAATATTTAAACTATTTCC 120
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      CTTTTCCAAGTAATGTGGTTTTCGCTTCGTTATTTAAACCACTACGAGGTTTCGCGTCGA 180
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      CGAAGTTATCATCACTATCATCATCATCATCATCATCGTACCAAGATTCAACGTGTTCTT 240
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      TATCAAGATCCAGTTGATCGTTATTGTTATTCTCCTCCTCGTTGTTGTCGTCGTCATCAT 300
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      CATCAATATCTTCGTCCAACTGNTGGTCATCTTCTTCCTCCTCCTCTTCATCTTCTTCCT 360
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      CATCTCCAATCAACTTGACCGAGTCTAATTCACTATCTCCAGAATCATTTCGATTATTAC 420
consensus_7747#1      -----------------------------TAAATATTTCCTGCTTTAATATGGTGATCCC 31
                                                   * * *** *** *  * * *  * * **  *

consensus_7747#0      TTTTCGATTGTA-GTATTG-TTGAAGCGACAACAACAGGTGATGAAATAGTTTCTTGTTG 478
consensus_7747#1      TGTTATGTATTACGAATTGACTTATTCCTTGACTTTTGGTAAGTCTATGGTTTTTT-TGG 90
                      * **   *  ** * ****  * *  *    **    *** *    ** **** ** * *

consensus_7747#0      TTGTTCCTCAATGGTTGGTACATA-GTCGTCATGACTAATAGTAGTTGTTGGAATTAAGT 537
consensus_7747#1      TGGTCTTTTGTATGTCCGTTTGTATACTGGCTTGTTTACTATTTTTGGTTGTCAATGAGG 150
                      * **   *     **  **   **    * * **  ** ** *  * ****  * * ** 

consensus_7747#0      TAGCATTAAACGGTAAGTTATCATCAAATA-ATGATGGTTGCATGGGGATAGGTTTATTT 596
consensus_7747#1      TGG--TTATGCAGT---CTAACACCCATTATATACATATTATACACGTGT---------- 195
                      * *  ***  * **    ** ** * * ** **     **  *   *  *          

consensus_7747#0      TGCATTTCAGCATGAAGATCACGATCACCTGGTAATTGTTGAGTTGGATAAGCTGAAGCA 656
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      GGTAAATTTAAACGTGCTTCTCTATCACCTTTTAACCATTTTTCTGTAGATAAAGCCTCC 716
consensus_7747#1      ------------------------------------------------------------