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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 687 fasta sequence
[GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACTTTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAGTAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTATTATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTC]
[+] EMBL CD187292 [GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACTTTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAGTAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTATTATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAG ]
[+] EMBL CD140215 [ CGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAATAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTC]
[+] EMBL CD140111 [ CGAGAACCACTCCTTTCGTTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGAC ]
[+] EMBL CD140227 [ CGAGAACCACTCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTGAATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAACTACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGATGCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATTTTGTTGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGATCCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATT ]
consensusID : consensus_7748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence
[ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATTTTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAGTTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT]
[-] EMBL CD196314 [ATATAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGAAATTTCGGACGACAGACATTTTTCAGCCCTGTAGTCAGACACGTTACAACTTATATGAGACAGCAAGTGACTCTCCAAAGTTGGGATAAAGGTATTAAACTATCGCCATACGTAAAATCAGTACGCTTTGTCTCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGGAGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTTTAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7748#0 GGGATGTTTCTTGACGATGAATAGTATTAACACTAACCAGTGCTGATGACTGTTGTGACT 60
consensus_7748#1 ------------------------------------------------------------
consensus_7748#0 TTAACTTATTTCTAAAAGCTAGCCTTTCCGATTTACGTGGTCTTGCTCGTTCCATCGGAG 120
consensus_7748#1 ------------------------------------------------------------
consensus_7748#0 TAATTATTGATTCATCTTGGTCGTCGTGAAGCGTTAAGTTGTCGGAGCCAGATGGTTTAT 180
consensus_7748#1 ------------------------------------------------------------
consensus_7748#0 TATTATTTCCTAGTTCGTGTGACACTGGATATTCTCTTGTAGCTAGTTTGCGAGAACCAC 240
consensus_7748#1 ------------------------------------------------------------
consensus_7748#0 TCCTTTCATTTTTAAATTTTCTGGCCGTAGATCTCAGCAGTCGAGATTTAGAGCCACTTG 300
consensus_7748#1 ------------------------------------------------------------
consensus_7748#0 AATTGGTGGAAGAGAAATCTGAATATCTGCTATTCATACCCTCTTCAATATTTTCTGAAC 360
consensus_7748#1 ---------------------------------------------------------ATA 3
*
consensus_7748#0 TACTTGTTCGTATTATGGTTGAACTTTCAACTTTTGATGATAAACGATCTAACATGGGAT 420
consensus_7748#1 TAAAAGTGTTTNTTAGATAAAAATTATGCATCCTTGA--------AATTTCGGACGACAG 55
** ** * *** ** * * * **** ** * * * *
consensus_7748#0 GCATATTGCGAATTTTCGGAGCCGTTAAACGATTTGACGATTCCAAGGATGAATTAAATT 480
consensus_7748#1 ACATTTTTCAGCCCT-----GTAGTCAGACACGTT-ACAACTTATATGAGACAGCAAGT- 108
*** ** * * * ** * ** ** ** * * * ** * ** *
consensus_7748#0 TTGATGATCCTAAAGGGAGGCGAGACATATTCGGTGACATCCAAGTATCGTGTAGTCGAT 540
consensus_7748#1 --GACTCTCC-AAAGTTGGGATAAAGGTATTAAACTATCGCCA-----TACGTAA--AAT 158
** *** **** ** * * **** * *** *** **
consensus_7748#0 CCGTACGATAACTGCCGTCATATAAAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG 600
consensus_7748#1 CAGTACGCT--TTGTC-TCATATAGAGTCTCCTTGTAAGTAGTTTCTTCTTCCCAAACGG 215
* ***** * ** * ******* ***********************************
consensus_7748#0 AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT 660
consensus_7748#1 AGTGACGAGTACTTACACTTGTTGATGCCATTCCTGACTGCATTTCATTTTGAACTTCTT 275
************************************************************
consensus_7748#0 TAACTGTTGAATTGGACGGATTTGGTC--------------------------- 687
consensus_7748#1 TAACTGTTGAATTGGACGGATTTGGTCGCTTCCAGATATCGAACATTTATTCAT 329
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||