These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 918 fasta sequence [ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTGAAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTATGGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTTTGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTAAAGATTATGATACAACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAACTGCTAGAACGTTATTAGCCTATGTGCAGCTCGTGATATTCTACTTTCCAAAACGTCTATATCGTTTTTGAAAGAACCATTAGAAGGCTTATCATATTATCATTCTATATCGGTCTTGGGACTGGCTGATCTTCTATGAGCATTTTTGTGAATAGATTTAATTTTGATGAAGGATTCTAATTGNATTACCTTATTAATGTCCNGGA] [+] EMBL CD081456 [ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTGAAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTATGGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTTTGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTAAAGATTATGATACAACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAACTGCTAGAACGTTATTAGCCTATGTGCAGCTCGTGATATTCTACTTTCCAAAACGTCTATATCGTTTTTGAAAGAACCATTAGAAGGCTTATCATATTATCATTCTATATCGGTCTTGGGACTGGCTGATCTTCTATGAGCATTTTTGTGAATAGATTTAATTTTGATGAAGGATTCTAATTGNATTACCTTATTAATGTCCNGGA] [+] EMBL CD197879 [ TATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTGAAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTATGGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAAT ] consensusID : consensus_7753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [ACGGACGAGACATGAAATTGAAAGACATAATGGTTACGAGAAGCTCGTGATGCTAAAGAACATGAATTGAAATTAGCACTGGCGAGACATAGTGAACATCTTTCACATATGTTACAATTACAGAAAGATAAAATGGAGCATCAATTCGCACATCAACTACGTGAAGAGTTAGCAAAAGAAAGAGTTGCTTTTGAAGCTGCTCTTATCGGTTGGACTAAGCGTATGGAAGCCATAGAAGATGTTGTGGATGGAAGAGCTGATCTAGATCGGTTAGCTAAAGAAGCACAATCATTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTTCCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACCGAAAATG] [+] EMBL CD084325 [ACGGACGAGACATGAAATTGAAAGACATAATGGTTACGAGAAGCTCGTGATGCTAAAGAACATGAATTGAAATTAGCACTGGCGAGACATAGTGAACATCTTTCACATATGTTACAATTACAGAAAGATAAAATGGAGCATCAATTCGCACATCAACTACGTGAAGAGTTAGCAAAAGAAAGAGTTGCTTTTGAAGCTGCTCTTATCGGTTGGACTAAGCGTATGGAAGCCATAGAAGATGTTGTGGATGGAAGAGCTGATCTAGATCGGTTAGCTAAAGAAGCACAATCATTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATTCCATTCGTGAATGCACCGCTTCCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTCTGTCTAATGATATAGTGGAAAATGGAGTTTGGACCGAAAATG] consensusID : consensus_7753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 493 fasta sequence [GTCCTTATGTTCAATACATTAAAGATTATGATACA-ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAAACTGCTAGAACGTTATTAGCCTATGTTGCAGCTCGTGATATTTCTACTTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTATTTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAGGCATCTTTTGTGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAAATGTACGTGAATA] [-] EMBL CD075281 [GTCCTTATGTTCAATACATTAAAGATTATGATACA ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATTTAGAAGCTAAACAAACTGCTAGAACGTTATTAGCCTATGTTGCAGCTCGTGATATTTCTACTTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTATTTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAGGCATCTTTTGTGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAAATGTACGTGAATA] [+] EMBL CD135804 [ TTATGATACAGGGGGAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTATCTAGTGCCAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACCTCTAGCGATGAAGCACTTGAAACGGCTGTACGATTGTTAGGTCAGTTGCGTGGTCAATCTCGTGTTGTTGCAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7753#0 ACTTCGGCACGAGGACTGATCTAGATCGGTTAGCTAAAGAAGCACAATCTTTATGGCTTT 60 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 CATGTGAAGCTTTAGCCTGTCGATTGCATTCAGATAGCCCATCAATGAAATCTCACCATG 120 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 AAACAAAAAGCGATTCAATTGTACTGAATCAAACTGGATCTTTAAAAGATTTTGTCAATT 180 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 CCATTCGTGAATGCACCGCTATCGGAAATTACCCTTTTGTCAATATAATTCTAGACAGTC 240 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 TGTCTAATGATATAGTGGAAAATGGAGTTTGGACAGAAAATGGGTTGAAGAAGAGATTTG 300 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 AAAAGGTATTTAACGTCTGTAGAAATGTTGCATTAATTGATGAAACAAGTGGCTCACTAT 360 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 GGGAATATGCTTTATCATGGCTACAGTCTATATTAGTAGTAGATGTGAAATATAAATGTT 420 consensus_7753#2 ------------------------------------------------------------ consensus_7753#1 ------------------------------------------------------------ consensus_7753#0 TGGAAGCGATTTCACGTATTAAACCAAATATTATTGGTAGTCCTTATGTTCAATACATTA 480 consensus_7753#2 ---------------------------------------GTCCTTATGTTCAATACATTA 21 consensus_7753#1 -------------------------------ACGGACGAGACATGAAATTGAAAGACATA 29 * * * * ** ** ** consensus_7753#0 AAGATTATGATACA---ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTAT 537 consensus_7753#2 AAGATTATGATACA---ACAAAACAGACGGACTCGAGACCAGATTCATTTCATTTGTTAT 78 consensus_7753#1 ATGGTTACGAGAAGCTCGTGATGCTAAAGAACATGA-ATTGAAATTAGCACTGGCGAGAC 88 * * *** ** * * * * * ** ** * * * * * * * consensus_7753#0 CTAGTGC-CAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACC 596 consensus_7753#2 CTAGTGC-CAAATTCGCTATGAATAGTGACCATAATATCTTTTCAGGTGACGAGAATACC 137 consensus_7753#1 ATAGTGAACATCTTTCACATATGTTACAATTACAGAAAGATAAAATGGAGCATCAATTCG 148 ***** ** ** ** * * * * * * * * * *** * consensus_7753#0 TCTAGCGA-----TGAAGCACTTGAAACGGCTGTA--CGATTGTTAGGTCAGTTGCGT-G 648 consensus_7753#2 TCTAGCGA-----TGAAGCACTTGAAACGGCTGTA--CGATTGTTAGGTCAGTTGCGT-G 189 consensus_7753#1 CACATCAACTACGTGAAGAGTTAGCAAAAGAAAGAGTTGCTTTTGAAGCTGCTCTTATCG 208 * * * ***** * * ** * * * ** * * * * * * consensus_7753#0 GTCAATCT---CGTGTTGTTGCAA-TGATTGGCTAGTTGATGCTCGACACTATTTAGA-- 702 consensus_7753#2 GTCAATCT---CGTGTTGTTGCAAATGATTGGCTAGTTGATGCTCGACACTATTTAGA-- 244 consensus_7753#1 GTTGGACTAAGCGTATGGAAGCCATAGAAGATGTTGTGGATGGAAGAGCTGATCTAGATC 268 ** ** *** * * ** * ** * ** **** ** ** **** consensus_7753#0 AGCTAAACAA-CTGCTAGAACGTTATTAGCCTATGT--GCAGCTCGTGATATT---CTAC 756 consensus_7753#2 AGCTAAACAAACTGCTAGAACGTTATTAGCCTATGT-TGCAGCTCGTGATATTT--CTAC 301 consensus_7753#1 GGTTAGCTAAAGAAGCACAATCATTATGGCTTTCATGTGAAGCTTTAGCCTGTCGATTGC 328 * ** ** * ** * * ** * * * **** * * * * consensus_7753#0 TTTCCAAAA-CGTCTATA-TCGTTTTTGAAA-GAACCATT-AGAAGGCTTATCATATTAT 812 consensus_7753#2 TTTCCAAAAACGTCTATAATCGTTTTTGAAAAGAACCATTTAGAAGGGCTATATCATTAT 361 consensus_7753#1 ATTCAGATAGCCCATCAATGAAATCTCACCATGAAACAA--AAAGCGATTCAATTGTACT 386 *** * * * * * * * * *** ** * * * * * * consensus_7753#0 ----CATTCTA--TATCGGTCTTGGG-ACTGGCTGA-TCTTCT-ATGAG--CAT-TTTTG 860 consensus_7753#2 TTATCATTCTTATTATCGTTCTTGGGTACTGTCTGAATCTTCTCATGAG-GCATCTTTTG 420 consensus_7753#1 GAATCAAACTGG--ATCTTTAAAAGATTTTGTC-AATTCCATTCGTGAATGCACCGCTTC 443 ** ** *** * * ** * * ** * *** ** ** consensus_7753#0 TGAA--TAG-ATTTAATTTTG--ATGAAG--GATTCTAATTGN--ATTA-CCTTATT--A 908 consensus_7753#2 TGAAATTAGTATTTAATTTTTGTATGAAGTGAATTCTAATTTGTAATTAGCCTTATTTAA 480 consensus_7753#1 CGGA------AATTACCCTTT-TGTCAATATAATTCTAGACAGTCTGTCTAATGATATAG 496 * * * *** ** * ** ****** * * ** consensus_7753#0 ATGTCCNGGA----------------- 918 consensus_7753#2 ATGTACGTGAATA-------------- 493 consensus_7753#1 TGGAAAATGGAGTTTGGACCGAAAATG 523 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||