cluster # 7765

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7765 cluster # 7765 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7765#0 length = 751 sequences # 2
consensus_7765#1 length = 318 sequences # 1

consensus_7765#2 length = 286 sequences # 1
consensus_7765#3 length = 182 sequences # 1

consensusID : consensus_7765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 751
fasta sequence

                              [GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGCGTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGAGGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTTGAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGACCATCAACAAGTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTATTGGAAGAAAAAACTTTGCTGAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCCAAACTTAACGGATTTTCTTGTATCAAAAGTGGTGGTATTCCATCACTTCTCTGAGTTCACCTCTTTATATACGAGAATAACCGTTTTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTATGACCGTCTAGTTCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGGTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACGCCCTATTAACTGATGAACTTGGTATTTATTGACCAATTTTTTTA]

[-] EMBL BG931417             [GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGCGTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGAGGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTTGAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD066381             [                                                                                                                                                                         ttATCAGGTTTGAGATGCTGGAGTAGGCTTAAAACAGTTTCTTTCTTAATAACTACAGGGTCCATCAACAAGTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTATTGGAAGAAAAAACTTTGCTGAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCCAAACTTAACGGATTTTCTTGTATCAAAAGTGGTGGTATTCCATCACTTCTCTGAGTTCACCTCTTTATATACGAGAATAACCGTTTTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTATGACCGTCTAGTTCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGGTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACGCCCTATTAACTGATGAACTTGGTATTTATTGACCAATTTTTTTA]




>consensus_7765#0
GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGC
GTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGA
GGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTT
GAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGACCATCAACAA
GTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTATTGGAAGAAAAAACTTTGCT
GAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCCAAACTTAACGGATT
TTCTTGTATCAAAAGTGGTGGTATTCCATCACTTCTCTGAGTTCACCTCTTTATATACGA
GAATAACCGTTTTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTATGACCGTCT
AGTTCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAACTAGATCTGTACTG
TTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGGTTCTT
AACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTAT
GAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACGCCCTATTAACTGA
TGAACTTGGTATTTATTGACCAATTTTTTTA

consensusID : consensus_7765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATCAACTGATGAGCTAGTATCTACTGACCAATCTATCTTAGTAGCACAATCCTGAATTTCTGGTATNGTAGCTCNTANAGNTGAT]

[+] EMBL CD196165             [CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATCAACTGATGAGCTAGTATCTACTGACCAATCTATCTTAGTAGCACAATCCTGAATTTCTGGTATNGTAGCTCNTANAGNTGAT]




>consensus_7765#1
CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTAC
TGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTC
TTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGT
ATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATCAACT
GATGAGCTAGTATCTACTGACCAATCTATCTTAGTAGCACAATCCTGAATTTCTGGTATN
GTAGCTCNTANAGNTGAT

consensusID : consensus_7765#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TTGGTCGTTTCTCATTACTGATAGGAAACACTTTACTGAAATAGTCCGATAAAGCTTCAGCTTTTTCGATATAATTTCTTGCCAATATTAACGGATTTTCTTGTATCAAAAGTGATGGGATTCCATCACTTCTCTGAGTTCGCCTCTTTATATGCGAGAATAACCGTTTTGGACTATATTTACAATCCCTAACCAATTGTTTTTCATATGACCTTCTAGTTCTACTAATTAACGCTTTACGTGTATTTCCCATCTTACAATGGCTGGATCTGTACTGTTCTAAGGC]

[+] EMBL CD119893             [TTGGTCGTTTCTCATTACTGATAGGAAACACTTTACTGAAATAGTCCGATAAAGCTTCAGCTTTTTCGATATAATTTCTTGCCAATATTAACGGATTTTCTTGTATCAAAAGTGATGGGATTCCATCACTTCTCTGAGTTCGCCTCTTTATATGCGAGAATAACCGTTTTGGACTATATTTACAATCCCTAACCAATTGTTTTTCATATGACCTTCTAGTTCTACTAATTAACGCTTTACGTGTATTTCCCATCTTACAATGGCTGGATCTGTACTGTTCTAAGGC]




>consensus_7765#2
TTGGTCGTTTCTCATTACTGATAGGAAACACTTTACTGAAATAGTCCGATAAAGCTTCAG
CTTTTTCGATATAATTTCTTGCCAATATTAACGGATTTTCTTGTATCAAAAGTGATGGGA
TTCCATCACTTCTCTGAGTTCGCCTCTTTATATGCGAGAATAACCGTTTTGGACTATATT
TACAATCCCTAACCAATTGTTTTTCATATGACCTTCTAGTTCTACTAATTAACGCTTTAC
GTGTATTTCCCATCTTACAATGGCTGGATCTGTACTGTTCTAAGGC

consensusID : consensus_7765#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGATCACGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCCTCGCCCAAACATATGGAGAGCTAACATACCAGAAATTCAGGATTGTGCTACTAAGATAGATTGGT]

[+] EMBL CD139360             [CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGATCACGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCCTCGCCCAAACATATGGAGAGCTAACATACCAGAAATTCAGGATTGTGCTACTAAGATAGATTGGT]




>consensus_7765#3
CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGATCA
CGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCCTCG
CCCAAACATATGGAGAGCTAACATACCAGAAATTCAGGATTGTGCTACTAAGATAGATTG
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7765#0      GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGC 60
consensus_7765#2      ------------------------------------------------------------
consensus_7765#1      ------------------------------------------------------------
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      GTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGA 120
consensus_7765#2      ------------------------------------------------------------
consensus_7765#1      ------------------------------------------------------------
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      GGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTT 180
consensus_7765#2      ------------------------------------------------------------
consensus_7765#1      ------------------------------------------------------------
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      GAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGACCATCAACAA 240
consensus_7765#2      ------------------------------------------------------------
consensus_7765#1      ------------------------------------------------------------
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      GTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTAT-TGGAAGAAAAAACTTTGC 299
consensus_7765#2      -----------------------TTGGTCGTTTCTCATTAC-TGATAGGAAACACTTTAC 36
consensus_7765#1      CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTAC 60
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      TGAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCC----AAACTTAAC 355
consensus_7765#2      TGAAATAGTCCGATAAAGCTTCAGCTTTTTCGATATAATTTCTTGCC----AATATTAAC 92
consensus_7765#1      TGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTC 120
consensus_7765#3      ---CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGA 57
                           *    *   *                  * *  **           *        

consensus_7765#0      GGATTTTCTTGTATCAAAAGTGGT--GGTATTCCA-TCACTTCTCTGAGTTCACCTCTTT 412
consensus_7765#2      GGATTTTCTTGTATCAAAAGTGAT--GGGATTCCA-TCACTTCTCTGAGTTCGCCTCTTT 149
consensus_7765#1      TTAACTTCTTTATTTATCCACGGT--GGACTATTG-TTCGGTCTACGTGG-CACCAAGTA 176
consensus_7765#3      TCACGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCC 117
                        *   * **   * *     * *  *   *     *    * *  *             

consensus_7765#0      ATATACGAGAATAACCGTT-TTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTA 471
consensus_7765#2      ATATGCGAGAATAACCGTT-TTGGACTATATTTACAATCCCTAACCAATTGTTTTTCATA 208
consensus_7765#1      TGGTATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATC 236
consensus_7765#3      TCGCCCAAACATATGGA-----GAGCTA-ACATACCAGAAATTCAGGATTGTGCTACTAA 171
                             *              *  ***    * *            *        *   

consensus_7765#0      ---TGACCGTCTAGT-TCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAAC 527
consensus_7765#2      ---TGACCTTCTAGT-TCTACTAATTAACGCTTTACGTGTATTTCCCATCTTACAATGGC 264
consensus_7765#1      AACTGATGAGCTAGTATCTACTGACCAA---TCTATCTTAGTAGCACAATCCTGAATTTC 293
consensus_7765#3      ----GATAGATTGGT--------------------------------------------- 182
                          **     * **                                             

consensus_7765#0      TAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACC 587
consensus_7765#2      TGGATCTGTACTGTTCTAAGGC-------------------------------------- 286
consensus_7765#1      TGGTATNGTAGCTCNTANAGNTGAT----------------------------------- 318
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      TAAGGAGGTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCA 647
consensus_7765#2      ------------------------------------------------------------
consensus_7765#1      ------------------------------------------------------------
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      CCAAGTATGGTATGAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACG 707
consensus_7765#2      ------------------------------------------------------------
consensus_7765#1      ------------------------------------------------------------
consensus_7765#3      ------------------------------------------------------------
                                                                                  

consensus_7765#0      CCCTATTAACTGATGAACTTGGTATTTATTGACCAATTTTTTTA 751
consensus_7765#2      --------------------------------------------
consensus_7765#1      --------------------------------------------
consensus_7765#3      --------------------------------------------