These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 751 fasta sequence [GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGCGTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGAGGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTTGAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGACCATCAACAAGTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTATTGGAAGAAAAAACTTTGCTGAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCCAAACTTAACGGATTTTCTTGTATCAAAAGTGGTGGTATTCCATCACTTCTCTGAGTTCACCTCTTTATATACGAGAATAACCGTTTTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTATGACCGTCTAGTTCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGGTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACGCCCTATTAACTGATGAACTTGGTATTTATTGACCAATTTTTTTA] [-] EMBL BG931417 [GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGCGTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGAGGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTTGAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGAC ] [+] EMBL CD066381 [ ttATCAGGTTTGAGATGCTGGAGTAGGCTTAAAACAGTTTCTTTCTTAATAACTACAGGGTCCATCAACAAGTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTATTGGAAGAAAAAACTTTGCTGAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCCAAACTTAACGGATTTTCTTGTATCAAAAGTGGTGGTATTCCATCACTTCTCTGAGTTCACCTCTTTATATACGAGAATAACCGTTTTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTATGACCGTCTAGTTCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGGTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACGCCCTATTAACTGATGAACTTGGTATTTATTGACCAATTTTTTTA] consensusID : consensus_7765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATCAACTGATGAGCTAGTATCTACTGACCAATCTATCTTAGTAGCACAATCCTGAATTTCTGGTATNGTAGCTCNTANAGNTGAT] [+] EMBL CD196165 [CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCACCAAGTATGGTATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATCAACTGATGAGCTAGTATCTACTGACCAATCTATCTTAGTAGCACAATCCTGAATTTCTGGTATNGTAGCTCNTANAGNTGAT] consensusID : consensus_7765#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TTGGTCGTTTCTCATTACTGATAGGAAACACTTTACTGAAATAGTCCGATAAAGCTTCAGCTTTTTCGATATAATTTCTTGCCAATATTAACGGATTTTCTTGTATCAAAAGTGATGGGATTCCATCACTTCTCTGAGTTCGCCTCTTTATATGCGAGAATAACCGTTTTGGACTATATTTACAATCCCTAACCAATTGTTTTTCATATGACCTTCTAGTTCTACTAATTAACGCTTTACGTGTATTTCCCATCTTACAATGGCTGGATCTGTACTGTTCTAAGGC] [+] EMBL CD119893 [TTGGTCGTTTCTCATTACTGATAGGAAACACTTTACTGAAATAGTCCGATAAAGCTTCAGCTTTTTCGATATAATTTCTTGCCAATATTAACGGATTTTCTTGTATCAAAAGTGATGGGATTCCATCACTTCTCTGAGTTCGCCTCTTTATATGCGAGAATAACCGTTTTGGACTATATTTACAATCCCTAACCAATTGTTTTTCATATGACCTTCTAGTTCTACTAATTAACGCTTTACGTGTATTTCCCATCTTACAATGGCTGGATCTGTACTGTTCTAAGGC] consensusID : consensus_7765#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGATCACGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCCTCGCCCAAACATATGGAGAGCTAACATACCAGAAATTCAGGATTGTGCTACTAAGATAGATTGGT] [+] EMBL CD139360 [CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGATCACGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCCTCGCCCAAACATATGGAGAGCTAACATACCAGAAATTCAGGATTGTGCTACTAAGATAGATTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7765#0 GGGTCGATAGTTACTAACTAAATCTCTACTCCCGGCTTTATACACCGGACTGAGTATTGC 60 consensus_7765#2 ------------------------------------------------------------ consensus_7765#1 ------------------------------------------------------------ consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 GTCATTCCAGTCTCTGGGCAATCTGGGCTGCCGCAGGGACATATCAAACAGTACCGTTGA 120 consensus_7765#2 ------------------------------------------------------------ consensus_7765#1 ------------------------------------------------------------ consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 GGGTTCAGCAATAACATCTGAGAGGGCTTTCATAATCCGAGGATGAATATCATCAGGTTT 180 consensus_7765#2 ------------------------------------------------------------ consensus_7765#1 ------------------------------------------------------------ consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 GAGATGCTGAAGTAGACTTAAAACAGTTTCTTTCTTAATAACTACAGGGACCATCAACAA 240 consensus_7765#2 ------------------------------------------------------------ consensus_7765#1 ------------------------------------------------------------ consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 GTCGCCACAATCACAATGAATAGGTGATCGTTCCTCATTAT-TGGAAGAAAAAACTTTGC 299 consensus_7765#2 -----------------------TTGGTCGTTTCTCATTAC-TGATAGGAAACACTTTAC 36 consensus_7765#1 CTAGTTCTACTAATTAGCGCTTTACAATTATTTCTAATCTTACGATAACTAGATCTGTAC 60 consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 TGAAATATTCCGAAAAAGCTTCCGCTTTTTCGGTATCATTTCTTGCC----AAACTTAAC 355 consensus_7765#2 TGAAATAGTCCGATAAAGCTTCAGCTTTTTCGATATAATTTCTTGCC----AATATTAAC 92 consensus_7765#1 TGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACCTAAGGAGTTTC 120 consensus_7765#3 ---CATGAGACATGAGGATATTGCCAACCTAAATATTCTTCCCCCGTTAGTAAATAGCGA 57 * * * * * ** * consensus_7765#0 GGATTTTCTTGTATCAAAAGTGGT--GGTATTCCA-TCACTTCTCTGAGTTCACCTCTTT 412 consensus_7765#2 GGATTTTCTTGTATCAAAAGTGAT--GGGATTCCA-TCACTTCTCTGAGTTCGCCTCTTT 149 consensus_7765#1 TTAACTTCTTTATTTATCCACGGT--GGACTATTG-TTCGGTCTACGTGG-CACCAAGTA 176 consensus_7765#3 TCACGCTGTTTTATCATTCACGTTTAGAGCTAGCGATTTGATATACGATCAGATTAAGCC 117 * * ** * * * * * * * * * * consensus_7765#0 ATATACGAGAATAACCGTT-TTGGACTATGTTTGCAATCCCTAACCAATTGTTTTTCGTA 471 consensus_7765#2 ATATGCGAGAATAACCGTT-TTGGACTATATTTACAATCCCTAACCAATTGTTTTTCATA 208 consensus_7765#1 TGGTATGAACGGGGACGTGACTGCACTAAACTTGCCTTTANATACAGACCACGCCTCATC 236 consensus_7765#3 TCGCCCAAACATATGGA-----GAGCTA-ACATACCAGAAATTCAGGATTGTGCTACTAA 171 * * *** * * * * consensus_7765#0 ---TGACCGTCTAGT-TCTACTAATTAACGCTTTATAATTATTTCTAATCTTACGATAAC 527 consensus_7765#2 ---TGACCTTCTAGT-TCTACTAATTAACGCTTTACGTGTATTTCCCATCTTACAATGGC 264 consensus_7765#1 AACTGATGAGCTAGTATCTACTGACCAA---TCTATCTTAGTAGCACAATCCTGAATTTC 293 consensus_7765#3 ----GATAGATTGGT--------------------------------------------- 182 ** * ** consensus_7765#0 TAGATCTGTACTGTTCTAAGCCAGTAGAGATGAACATGTTCCAGTGTTTTTTTCTACACC 587 consensus_7765#2 TGGATCTGTACTGTTCTAAGGC-------------------------------------- 286 consensus_7765#1 TGGTATNGTAGCTCNTANAGNTGAT----------------------------------- 318 consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 TAAGGAGGTTCTTAACTTCTTTATTTATCCACGGTGGACTATTGTTCGGTCTACGTGGCA 647 consensus_7765#2 ------------------------------------------------------------ consensus_7765#1 ------------------------------------------------------------ consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 CCAAGTATGGTATGAACCGGGACGTGACTGACCTAAACTTGCCTTTAAATAACGACCACG 707 consensus_7765#2 ------------------------------------------------------------ consensus_7765#1 ------------------------------------------------------------ consensus_7765#3 ------------------------------------------------------------ consensus_7765#0 CCCTATTAACTGATGAACTTGGTATTTATTGACCAATTTTTTTA 751 consensus_7765#2 -------------------------------------------- consensus_7765#1 -------------------------------------------- consensus_7765#3 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||