These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 768 fasta sequence [CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACACGGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTACATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGACTTCTTTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT] [+] EMBL CD064934 [CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACACGGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTACATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATT ] [-] EMBL CD072121 [ ATTTACAGCATTTTAGTGAATATTTCTCTTCATAACACGGTACACATACTACACCATCGTCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTACATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAG ] [+] EMBL CD179517 [ TATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGACTTCTTTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT] [+] EMBL CD179412 [ TATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGACTTC ] consensusID : consensus_7768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGACTAAATATTGAATTAAGAGAATGATTTAAGATTGAAAATCCAAAGCGTAACTTTACCTTCTTTTAAATGATTTTTCTATTTGATTTTTTAGCCAGTAGACAA] [+] EMBL CD193884 [TTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGACTAAATATTGAATTAAGAGAATGATTTAAGATTGAAAATCCAAAGCGTAACTTTACCTTCTTTTAAATGATTTTTCTATTTGATTTTTTAGCCAGTAGACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7768#0 CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACAC 60 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 GGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTA 120 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 CATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGT 180 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 GAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAA 240 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 CATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCT 300 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 TGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCT 360 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 TTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCA 420 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 TAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGAT 480 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 AGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATT 540 consensus_7768#1 ------------------------------------------------------------ consensus_7768#0 TTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAA 600 consensus_7768#1 --------------------------TTTGAACAGAAATTAAAACAAAACAACAACAGAA 34 ********************************** consensus_7768#0 CACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTG 660 consensus_7768#1 CACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTG 94 ************************************************************ consensus_7768#0 CTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGAC 720 consensus_7768#1 CTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGAC 154 ************************* ********************************** consensus_7768#0 T--------------------------------------------------------TCT 724 consensus_7768#1 TAAATATTGAATTAAGAGAATGATTTAAGATTGAAAATCCAAAGCGTAACTTTACCTTCT 214 * *** consensus_7768#0 TTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT 768 consensus_7768#1 TTTAAATGATTTTTCTATTTGATTTTTTAGCCAGTAGACAA--- 255 *********** ************ **************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||