cluster # 7768

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Schistosoma mansoni
cluster # 7768 cluster # 7768 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7768#0 length = 768 sequences # 4

consensus_7768#1 length = 255 sequences # 1

consensusID : consensus_7768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 768
fasta sequence

                              [CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACACGGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTACATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGACTTCTTTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT]

[+] EMBL CD064934             [CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACACGGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTACATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATT                                                                                                                                    ]
[-] EMBL CD072121             [                      ATTTACAGCATTTTAGTGAATATTTCTCTTCATAACACGGTACACATACTACACCATCGTCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTACATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD179517             [                                                                                                                             TATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGACTTCTTTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT]
[+] EMBL CD179412             [                                                                                                                             TATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGTGAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAACATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCTTGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCTTTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCATAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGATAGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATTTTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGACTTC                                             ]




>consensus_7768#0
CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACAC
GGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTA
CATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGT
GAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAA
CATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCT
TGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCT
TTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCA
TAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGAT
AGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATT
TTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAA
CACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTG
CTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGAC
TTCTTTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT

consensusID : consensus_7768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [TTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGACTAAATATTGAATTAAGAGAATGATTTAAGATTGAAAATCCAAAGCGTAACTTTACCTTCTTTTAAATGATTTTTCTATTTGATTTTTTAGCCAGTAGACAA]

[+] EMBL CD193884             [TTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGACTAAATATTGAATTAAGAGAATGATTTAAGATTGAAAATCCAAAGCGTAACTTTACCTTCTTTTAAATGATTTTTCTATTTGATTTTTTAGCCAGTAGACAA]




>consensus_7768#1
TTTGAACAGAAATTAAAACAAAACAACAACAGAACACGAAAATCGGTGTTAAAGCAAGTA
ACTGAATATTATTCTATTGCCAAGAAGGTCAGTGCTCCGGAAGATTGATTGACTGAACAA
AATCTCAATTTATTTTTGTACACTAATAAAAGACTAAATATTGAATTAAGAGAATGATTT
AAGATTGAAAATCCAAAGCGTAACTTTACCTTCTTTTAAATGATTTTTCTATTTGATTTT
TTAGCCAGTAGACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7768#0      CCTTTTTGAATGGCCTTATTACATTTACAGCATTTTTGTGAATATTTCTCTTCATAACAC 60
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      GGTACACATACTACACCATCATCTTTTGGTACGAAACTTTTAGCTCCAATCGGTTGTTTA 120
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      CATTCTATGCAAGTAAAACACTCTTCATGCCATGTTGATCCTTTATATTCGTATTTACGT 180
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      GAACCAGCTTTGAATATCTTTTTGCAACCATCACAACGCGGTGAAAATTTCTCATCATAA 240
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      CATTCTGGACAGTATAAATCATTGTCTTTTGTGGCGAATGGTTTATCAGCTAACGATGCT 300
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      TGACAAACACTACAGAAGAAACACCTTTCATGCCAATGTTTATCTTTGAATGAAAGATCT 360
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      TTAGAGTCACAGGTAATTTTCTCTTTGCATAATTCACATGCATGACTGAATTTACTTTCA 420
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      TAACAGGCAACACAGTATGGTTTCTCATCATTCAGTATATACTTTTGTCCAATTAATGAT 480
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      AGATTACAATTGGAACAATTGAATTGTTCATTCGCATTTACAATGACCTCATCTGACATT 540
consensus_7768#1      ------------------------------------------------------------
                                                                                  

consensus_7768#0      TTATTTTAAAGAATACGAAAATGAATTTTGAACAGAAATTAAAACAAAACAACAACAGAA 600
consensus_7768#1      --------------------------TTTGAACAGAAATTAAAACAAAACAACAACAGAA 34
                                                **********************************

consensus_7768#0      CACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTG 660
consensus_7768#1      CACGAAAATCGGTGTTAAAGCAAGTAACTGAATATTATTCTATTGCCAAGAAGGTCAGTG 94
                      ************************************************************

consensus_7768#0      CTCCGGAAGATTGATTGACTGAACANAATCTCAATTTATTTTTGTACACTAATAAAAGAC 720
consensus_7768#1      CTCCGGAAGATTGATTGACTGAACAAAATCTCAATTTATTTTTGTACACTAATAAAAGAC 154
                      ************************* **********************************

consensus_7768#0      T--------------------------------------------------------TCT 724
consensus_7768#1      TAAATATTGAATTAAGAGAATGATTTAAGATTGAAAATCCAAAGCGTAACTTTACCTTCT 214
                      *                                                        ***

consensus_7768#0      TTTAAATGATTNTTCTATTTGATTNTTTAGCCAGTAGACAAACT 768
consensus_7768#1      TTTAAATGATTTTTCTATTTGATTTTTTAGCCAGTAGACAA--- 255
                      *********** ************ ****************