These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAATTCAC] [+] EMBL CD116306 [TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAATTCAC] [+] EMBL CD186637 [ ttgataacgACAATTTC TCACTATCCTA CGGAATT ATT GCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAGTAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCtt ] consensusID : consensus_7771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [TAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAATATCTGCTGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGCTGTATTACTTTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTCATATAGAAATCTAAACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAGTCATAATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACATTGAAGGTCAT] [-] EMBL CD154698 [TAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAATATCTGCTGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGCTGTATTACTTTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTCATATAGAAATCTAAACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAGTCATAATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACATTGAAGGTCAT] consensusID : consensus_7771#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [AAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCTACGGAATTATTGCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCAT] [-] EMBL CD168342 [AAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCTACGGAATTATTGCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCAT] consensusID : consensus_7771#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACATCTAATTTGACTACCGAGTATTTACACAGTGACCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCT] [-] EMBL CD166450 [AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACATCTAATTTGACTACCGAGTATTTACACAGTGACCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7771#2 -----------------------------------------------------AAATCAC 7 consensus_7771#3 ------------------------------------------------------------ consensus_7771#0 TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCAC 60 consensus_7771#1 ------------------------------------------------------------ consensus_7771#2 AAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAA 67 consensus_7771#3 ------------------------------------------------------------ consensus_7771#0 AGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAA 120 consensus_7771#1 -------------------------------------------------TAGGTCTAGTC 11 consensus_7771#2 ATGATGTGAATCCAAATTTGATA-ACGA--CAATTTCTCACTATCCTACGGAATTATTGC 124 consensus_7771#3 ------------------------------------------------------------ consensus_7771#0 CAAGACATAATAAACCTTTGACACAAAG--TCATCAATTGCCGAGTGGATTTGATTTACC 178 consensus_7771#1 CTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTC 71 consensus_7771#2 AACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATA---TCTAG 181 consensus_7771#3 ------------AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATA---TCTAG 45 consensus_7771#0 AACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATA---TCTAG 235 consensus_7771#1 CTCCTCCACATCCACCTCCTAGACGTTTAAGT--GGTTCTGGCGAACAAACAAGACATAA 129 ** *** ** ** * *** * * * ** * ** consensus_7771#2 CAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGC 241 consensus_7771#3 CAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGC 105 consensus_7771#0 CAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGC 295 consensus_7771#1 TAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAATATCTGC 189 *** * ** ** * ** ** ** * ** * * * *** consensus_7771#2 -ATCTTCCTTCTAATAACTGTTCTA-CTGGATCTAAAATAAACAAGATGGACACATTATC 299 consensus_7771#3 -ATCTTCCTTCTAATAACTGTTCTA-CTGGATCTAAAATAAACAAGATGGACACATTATC 163 consensus_7771#0 -ATCTTCCTTCTAATAACTGTTCTA-CTGGATCTAAAATAAACAAGATGGACACATTATC 353 consensus_7771#1 TGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGCTGTATTACT 249 * * ** * * ** * *** ** * * * **** consensus_7771#2 TTCTGTACAGAATACTGGATATTCTCAAGGTTTATTA--CATCAACCTGATACTCAGGGA 357 consensus_7771#3 TTCTGTACAGAATACTGGATATTCTCAAGGTTTATTA--CATCAACATCTAATTTGACTA 221 consensus_7771#0 TTCTGTACAGAATACTGGATATTCTCAAGGTTTATTA--CATCAACCTGATACTCAGGGA 411 consensus_7771#1 TTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTCATATAGAAA 309 *** * *** ** * ** ****** * ** * * consensus_7771#2 CGTCAGACCCAT------------------------------------------------ 369 consensus_7771#3 CCGAGTATTTACACAGTGACCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCA-T 280 consensus_7771#0 CGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGT 471 consensus_7771#1 TCTAA-----ACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAGTCAT 364 * consensus_7771#2 ------------------------------------------------------------ consensus_7771#3 CCTGTTAAGTCTACTTTACC-TGGACGCCGAAATGATGTGAATCCAAATTTGATAACGAC 339 consensus_7771#0 CCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAAT 531 consensus_7771#1 AATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACATTGAA 424 consensus_7771#2 ---------------- consensus_7771#3 AATTTCTCACTATCCT 355 consensus_7771#0 TCAC------------ 535 consensus_7771#1 GGTCAT---------- 430 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||