cluster # 7771

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Schistosoma mansoni
cluster # 7771 cluster # 7771 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7771#0 length = 535 sequences # 2
consensus_7771#1 length = 430 sequences # 1

consensus_7771#2 length = 369 sequences # 1
consensus_7771#3 length = 355 sequences # 1

consensusID : consensus_7771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAATTCAC]

[+] EMBL CD116306             [TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAATTCAC]
[+] EMBL CD186637             [                                                                                                                                     ttgataacgACAATTTC TCACTATCCTA CGGAATT ATT  GCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAGTAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCtt       ]




>consensus_7771#0
TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCAC
AGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAA
CAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAA
CAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAAT
TATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTT
CCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTA
CAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACC
CATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGTCCAGATAAT
TCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAATTCAC

consensusID : consensus_7771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [TAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAATATCTGCTGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGCTGTATTACTTTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTCATATAGAAATCTAAACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAGTCATAATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACATTGAAGGTCAT]

[-] EMBL CD154698             [TAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAACAAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAATATCTGCTGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGCTGTATTACTTTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTCATATAGAAATCTAAACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAGTCATAATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACATTGAAGGTCAT]




>consensus_7771#1
TAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACA
GAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAAC
AAGACATAATAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAAC
AATATCTGCTGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGC
TGTATTACTTTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTC
ATATAGAAATCTAAACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAG
TCATAATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACAT
TGAAGGTCAT

consensusID : consensus_7771#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [AAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCTACGGAATTATTGCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCAT]

[-] EMBL CD168342             [AAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCTACGGAATTATTGCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGTCAGACCCAT]




>consensus_7771#2
AAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGA
CGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCTACGGAATTA
TTGCAACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTA
GCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATG
CATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCT
TCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACCTGATACTCAGGGACGT
CAGACCCAT

consensusID : consensus_7771#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACATCTAATTTGACTACCGAGTATTTACACAGTGACCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCT]

[-] EMBL CD166450             [AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATAACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTGGATATTCTCAAGGTTTATTACATCAACATCTAATTTGACTACCGAGTATTTACACAGTGACCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCT]




>consensus_7771#3
AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATATCTAGCAAATTATGCTCAGA
ATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGCATCTTCCTTCTAATA
ACTGTTCTACTGGATCTAAAATAAACAAGATGGACACATTATCTTCTGTACAGAATACTG
GATATTCTCAAGGTTTATTACATCAACATCTAATTTGACTACCGAGTATTTACACAGTGA
CCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACC
TGGACGCCGAAATGATGTGAATCCAAATTTGATAACGACAATTTCTCACTATCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7771#2      -----------------------------------------------------AAATCAC 7
consensus_7771#3      ------------------------------------------------------------
consensus_7771#0      TTAGGTCTAGTCCTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCAC 60
consensus_7771#1      ------------------------------------------------------------
                                                                                  

consensus_7771#2      AAGTAGTGACATCTAGACAATCTAGTCATCCTGTTAAGTCTACTTTACCTGGACGCCGAA 67
consensus_7771#3      ------------------------------------------------------------
consensus_7771#0      AGAGATTTTCTCCTCCTCCACATCCACCTCCTAGACGTTTAAGTGGTTCTGGCGAACAAA 120
consensus_7771#1      -------------------------------------------------TAGGTCTAGTC 11
                                                                                  

consensus_7771#2      ATGATGTGAATCCAAATTTGATA-ACGA--CAATTTCTCACTATCCTACGGAATTATTGC 124
consensus_7771#3      ------------------------------------------------------------
consensus_7771#0      CAAGACATAATAAACCTTTGACACAAAG--TCATCAATTGCCGAGTGGATTTGATTTACC 178
consensus_7771#1      CTATGCTTAATTCACCTGTGTTCCAATATCCAGCACCTAACAACTCACAGAGATTTTCTC 71
                                                                                  

consensus_7771#2      AACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATA---TCTAG 181
consensus_7771#3      ------------AACAACCTGGATTACTACTTCAGGTATTACCACAGGAATA---TCTAG 45
consensus_7771#0      AACAACAGCAACAACAACCTGGATTACTACTTCAGGTATTACCACAGGAATA---TCTAG 235
consensus_7771#1      CTCCTCCACATCCACCTCCTAGACGTTTAAGT--GGTTCTGGCGAACAAACAAGACATAA 129
                                   **  *** **    **  *  ***  *  *  *  ** *     ** 

consensus_7771#2      CAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGC 241
consensus_7771#3      CAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGC 105
consensus_7771#0      CAAATTATGCTCAGAATTTGGCTAAGCTTAATGTCAATAAAAATTCTGGAGATTTAATGC 295
consensus_7771#1      TAAACCTTTGACACAAAGTCATCAATTGCCGAGTGGATTTGATTTACCAACAATATCTGC 189
                       ***   *   ** **  *    **       **  **   * **    * * *   ***

consensus_7771#2      -ATCTTCCTTCTAATAACTGTTCTA-CTGGATCTAAAATAAACAAGATGGACACATTATC 299
consensus_7771#3      -ATCTTCCTTCTAATAACTGTTCTA-CTGGATCTAAAATAAACAAGATGGACACATTATC 163
consensus_7771#0      -ATCTTCCTTCTAATAACTGTTCTA-CTGGATCTAAAATAAACAAGATGGACACATTATC 353
consensus_7771#1      TGTAGCTAGGGCAGCAAGTATGTTATCCCCTTCTCAACTTGAAGCTGCAGCTGTATTACT 249
                        *         *  ** * *  ** *    *** ** *  *       *    ****  

consensus_7771#2      TTCTGTACAGAATACTGGATATTCTCAAGGTTTATTA--CATCAACCTGATACTCAGGGA 357
consensus_7771#3      TTCTGTACAGAATACTGGATATTCTCAAGGTTTATTA--CATCAACATCTAATTTGACTA 221
consensus_7771#0      TTCTGTACAGAATACTGGATATTCTCAAGGTTTATTA--CATCAACCTGATACTCAGGGA 411
consensus_7771#1      TTCCCAGTGGGATAATGTTAACCAATTAGCATTATTAGCTAATAATTCCTCATATAGAAA 309
                      ***      * *** **   *      **  ******   *  **      *       *

consensus_7771#2      CGTCAGACCCAT------------------------------------------------ 369
consensus_7771#3      CCGAGTATTTACACAGTGACCATAAATCACAAGTAGTGACATCTAGACAATCTAGTCA-T 280
consensus_7771#0      CGTCAGACCCATATATCTACTCATAATAATTTACCGAATCTACCACTCAGGATAAAAAGT 471
consensus_7771#1      TCTAA-----ACAACATTGTTGATTCTTCCGGGAATAAACAACCAGTCAACTCAAGTCAT 364
                                *                                                 

consensus_7771#2      ------------------------------------------------------------
consensus_7771#3      CCTGTTAAGTCTACTTTACC-TGGACGCCGAAATGATGTGAATCCAAATTTGATAACGAC 339
consensus_7771#0      CCAGATAATTCAAAGATTCAGCGGACATCTCAGTCACTTAGGTCTAGTCCTATGCCTAAT 531
consensus_7771#1      AATTTTTCTCCACCGGTTTCTTCTGGACCAAATCCTGTTACTAGTGGTGGTTACATTGAA 424
                                                                                  

consensus_7771#2      ----------------
consensus_7771#3      AATTTCTCACTATCCT 355
consensus_7771#0      TCAC------------ 535
consensus_7771#1      GGTCAT---------- 430