These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1237 fasta sequence [GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGTATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGAAGGTGATTCACCTAGTACTCCAATGAATTCGTCGAATCAATTCAATAAAAAATCATCAACAAAATGTCTTGCTAGTAAACAAATTTCATTAAGATCTGATGGAACTAATCGTGTCTATGATATAAGATTTGGATGTCCAGTAAAGTTGGTTAAAAACCGAAGATACTATTTAAGTTTGAGCACATCANATTCAGATCATAATCCAGCATCAATGTCTACATCTTCAACAGC-ATT-ATTCATC-ACATCATATATTGGTTTCTATGGTGGAACAGAAATTCTAATTCATTGTCCATCAGAAGAAACATTGAATAAACAAGATAGCGAAACAATAACAAGCAGCAACAAGAAATCCTCATCATCAACATCATCTAACACTAGAAAGAAACGATCAGTAACAAACAAACTAGGTTTTGTAACCAACCACAATGATAACTCACATTTATTAGGTAATAGTAATGAAACAGTCATATTTAATTTTCATGATAGTTGGGATGGTCTAGAAAATGGGAGTGTGGATAGAGGATTAATACCGGATTTATTATTTTATACTTGTTTTTAAAACTTTTTTCATTATCATCATTCATGTACACATTACTCTTTATGGTTCCTTTCATATTTGTTACATATATATATGGGCAACATAGTTACAAAATGATGTTTACAAAGACAAAGTCTACATATACATTACTTTCATCATCATCCCCTTATCCATTCATTACTATATTATCATCCATATTCATATATTATACAATACAACTATGGT] [+] EMBL CD082106 [GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGTATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGAAGGTGATTCACCTAGTACTCCAATGAATTCGTCGAATCAATTCAATAAAAAATCATCAACAAAATGTCTTGCTAGTAAACAAATTTCATTAAGATCTGATGGAACTAATCGTGTCTATGATATAAGATTTGGATGTCCAGTAAAGTTGGTTAAAAACCGAAGATACTATTTAAGTTTGAGCACATCANATTCAGATCATAATCCAGCATCAATGTCTACATCTTCAACAGC ATT ATTCATC ACATCATATATTGGTTTCTA ] [+] EMBL CD110843 [ GACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTATTGCTGGTGTTGGAATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAATTAAAAACAGGCAATGGAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTATCAGATCGAATGAATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATACATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATATTACAGGATTATCAAGGCTAGATGA ] [-] EMBL CD075721 [ AAACCGAAGATACTATTTAAGTTTGAGCACATCAAATTCAGATCATAATCCAGCATCAATGTTTACATCTTCAACAGCAATTAATTCATCAACATCATATATTGGTTTCTATGGTGGAACAGAAATTCTAATTCATTGTCCATCAGAAGAAACATTGAATAAACAAGATAGCGAAACAATAACAAGCAGCAACAAGAAATCCTCATCATCAACATCATCTAACACTAGAAAGAAACGATCAGTAACAAACAAACTAGGTTTTGTAACCAACCACAATGATAACTCACATTTATTAGGTAATAGTAATGAAACAGTCATATTTAATTTTCATGATAGTTGGGATGGTCTAGAAAATGGGAGTGTGGATAGAGGATTAATACCGGATTTATTATTTTATACTTGTTTTTAAAACTTTTTTCATTATCATCATTCATGTACACATTACTCTTTATGGTTCCTTTCATATTTGTTACATATATATATGGGCAACATAGTTACAAAATGATGTTTACAAAGACAAAGTCTACATATACATTACTTTCATCATCATCCCCTTATCCATTCATTACTATATTATCATCCATATTCATATATTATACAATACAACTATGGT] consensusID : consensus_7772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATTATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATATTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCATCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAGGAGATGAAAACTGTA] [-] EMBL CD148484 [ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATTATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGATTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATTTAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATATTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCATCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAGGAGATGAAAACTGTA] consensusID : consensus_7772#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [CTCGCGGCCAAGATTCGGCACGAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTANTTGCTGGTGTTGGATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAAT] [+] EMBL CD078196 [CTCGCGGCCAAGATTCGGCACGAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAATTAGTTTTTCGGTATCTGCATCTATATTTANTTGCTGGTGTTGGATTTATGGTTCAACACAAGTTGGTGATATACGTACAGTTCATGTTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7772#0 ------------------------------------------------------------ consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ATATGCAATTAAAAAAAAAGATCATTCTAATGGATTCACAGGCAATGATTCAACAACATT 60 consensus_7772#0 ------------------GGAACATTCAATCTATTTAACAAATCAATCATCATTATCAGA 42 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ATCCAATCCATCACCTATATGTAATTCAATCTATTTAACAAATCAATCATCATTACCAGA 120 consensus_7772#0 TTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATT 102 consensus_7772#2 ---------------------------------------CTCGCGGCCAAGATTCGGCAC 21 consensus_7772#1 TTCTGGACCATTTCCACGTGAACCAAGAATAGGACCTAAACTATGGAGATGTTGTCGATT 180 ** * * * * consensus_7772#0 TAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT 162 consensus_7772#2 GAGGCGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT 81 consensus_7772#1 TAAACGTATTCGTAAAGATTTATTATCATTAACTGCTTCTAATAATCATCGGCATACAAT 240 * ******************************************************** consensus_7772#0 TAGTTTTTCGGTAT--CTGCATCTATATTTATT-GC---------TGGTGTTGGAATTTA 210 consensus_7772#2 TAGTTTTTCGGTAT--CTGCATCTATATTTANTTGC---------TGGTGTTGGA-TTTA 129 consensus_7772#1 TAGTTTTTCGGTAAGGTTTCATTCTTTCTTAGTTATATCTAAGCGTAACAGTAATTTATA 300 ************* * *** * *** * * * * ** consensus_7772#0 TGGTTCAACACAAGTTGGTGATA-TACGTACAGTTCATGTTGAATTAAAAACAGGCAATG 269 consensus_7772#2 TGGTTCAACACAAGTTGGTGATA-TACGTACAGTTCATGTTGAAT--------------- 173 consensus_7772#1 TTCTCCCTTTCAACTGGATAGTAATGCATTAACCTTTTAATGGCTTGAATGAAGTAATCA 360 * * * *** * * * ** * * * * * * ** * consensus_7772#0 GAAGTGCACCTCCACCATCATCATCATCAGCTAATGTACCATCAAACGGAAATCAATTAT 329 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 TCTGATTATCAGATGTATTTCACGTGTTAGATTAATGAATAAACTAAGAAGAAGAAGAAG 420 consensus_7772#0 CAGATCGAATGTATCTTTCACAAGCCTCAAGAAGTACAAGTGATCTAACTAATTTGAATA 389 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 GAGATGAAAACTGTA--------------------------------------------- 435 consensus_7772#0 CATCTACACGTTTATTTCATAATCATAATAATCGTGGAGGATATTTAAATATTTGGGATA 449 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TTACAGGATTATCAAGGCTAGATGAAGGTGATTCACCTAGTACTCCAATGAATTCGTCGA 509 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ATCAATTCAATAAAAAATCATCAACAAAATGTCTTGCTAGTAAACAAATTTCATTAAGAT 569 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 CTGATGGAACTAATCGTGTCTATGATATAAGATTTGGATGTCCAGTAAAGTTGGTTAAAA 629 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ACCGAAGATACTATTTAAGTTTGAGCACATCANATTCAGATCATAATCCAGCATCAATGT 689 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 CTACATCTTCAACAGCATTATTCATCACATCATATATTGGTTTCTATGGTGGAACAGAAA 749 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 TTCTAATTCATTGTCCATCAGAAGAAACATTGAATAAACAAGATAGCGAAACAATAACAA 809 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 GCAGCAACAAGAAATCCTCATCATCAACATCATCTAACACTAGAAAGAAACGATCAGTAA 869 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 CAAACAAACTAGGTTTTGTAACCAACCACAATGATAACTCACATTTATTAGGTAATAGTA 929 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ATGAAACAGTCATATTTAATTTTCATGATAGTTGGGATGGTCTAGAAAATGGGAGTGTGG 989 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ATAGAGGATTAATACCGGATTTATTATTTTATACTTGTTTTTAAAACTTTTTTCATTATC 1049 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ATCATTCATGTACACATTACTCTTTATGGTTCCTTTCATATTTGTTACATATATATATGG 1109 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 GCAACATAGTTACAAAATGATGTTTACAAAGACAAAGTCTACATATACATTACTTTCATC 1169 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ATCATCCCCTTATCCATTCATTACTATATTATCATCCATATTCATATATTATACAATACA 1229 consensus_7772#2 ------------------------------------------------------------ consensus_7772#1 ------------------------------------------------------------ consensus_7772#0 ACTATGGT 1237 consensus_7772#2 -------- consensus_7772#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||