These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 719 fasta sequence [GTTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTAAAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAAGCTTTACCAACATCCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTCTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAACTTATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTGGAACTGGAGTCTCAGGTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACCCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCCCAGTTAATCAAATGCCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATCAATTCGGTTTAGCTAACTTTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT] [+] EMBL CD180864 [GTTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTAAAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAAGCTTTACCAACATCCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTCTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAACTTATGCGAATCAGTTTGGGATACCATCT ] [-] EMBL CD181056 [ TTTATTAGTACCAGTAGCTCAATGTGGTTCAATAATTGGTAAGGGAGGATCTAAGATTAAAGATGTTCGTGAGTTAACTGGTGCATCAATTCAAGTTGCTAGTGAATCTTTACCAACATCCACAGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAACATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAATTTATGCGAATCAGTTTGGGATACCATCTG ] [-] EMBL CD072348 [ TGAATCAGGATATACTACACCAATATTATCATCAGCCTCGTCACTATCTAACGAAGTGAGCTCTGTTAGTCCAACTTTAAATAGATCTTATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTGGAACTGGAGTCTCAGGTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACCCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCCCAGTTAATCAAATGCCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATCAATTCGGTTTAG ] [-] EMBL CD072354 [ GTTCATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACTCAATCTGCCTACAGCAAATACTATGCAATCTCCTCTAACAGTAATTGGTTCTGGTCGACCAGTTAATCAAATGTCAGATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGAATCAATTAGATTTAGCTAACTTTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT] consensusID : consensus_7781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCAACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTCTAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGGGGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGAC] [-] EMBL CD187361 [CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCAACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTCTAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGGGGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTACAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTTTAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATCCAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7781#0 ------------------------------------------------------------ consensus_7781#1 CATCACTGCCATGTTGGTAAGCTTTCACGTAGCGAGCTTGAAATTGATGGAAGCAGCCCA 60 consensus_7781#0 ------------------------GTTTATT-AGTACC--AGTAG-CTCAAT-GTGGTTC 31 consensus_7781#1 ACTGTCCTCGCAGTGAGCCTTACCGTTTATTTAGTAGCCAAGTAGGCTCAATCGTGGTTC 120 ******* **** * ***** ****** ******* consensus_7781#0 -AATAA-TTGGTAAGGG-AGGATCT--AAGATTAAAGA-TGTTC--GTGAGTTAACTGGT 83 consensus_7781#1 TAATAAGTTGGTAAGGGGAGGATCTTAAGGATTAAAGAATGTTTCGGGGAGTTAACGGGG 180 ***** ********** ******* * ********* **** * ******** ** consensus_7781#0 G---CATCAATTCAAG-TTGCTAGTGAAGCTTTACCAACATCCACAG-AAAGAACAGTTA 138 consensus_7781#1 GGCATGCAAGTTCAAGGTTGCTAGTGAAGCTTTACCAAAAATCAAAGGAAAGAACAGTTA 240 * * ****** ********************* * ** ** ************ consensus_7781#0 CAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGTCTATTGTGTGATATATTTT 198 consensus_7781#1 CAATATCAGGTACAGCGGATTCAATCTCCAAATGTATTCGACTATTGTGTGATATATTTT 300 **************************************** ******************* consensus_7781#0 TAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATC 258 consensus_7781#1 TAGAGTGTCCAAATAAGGGTCCGGTCATTCTTTATCGACCAAAACCTGTCATTGGTAATC 360 ************************************************************ consensus_7781#0 CAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTG 318 consensus_7781#1 CAGGATTAATATGTCCTGCCACTACATTTTCATCTGGTTTACTTCATTCAAACTTGTCTG 420 ************************************************************ consensus_7781#0 GACTTCCACTTTCAGTGTGCGAGAATTCACATGAATCAGGATATACTACACCAATATTAA 378 consensus_7781#1 GAC--------------------------------------------------------- 423 *** consensus_7781#0 CATCAGCCTCGTTACTATCTAACGAAGTGAACTCTGTTAGTCCAACTTTAAATAGAACTT 438 consensus_7781#1 ------------------------------------------------------------ consensus_7781#0 ATGCGAATCAGTTTGGGATACCATCTGGTATTTTATCTGGTGGAACTGGAGTCTCAGGTT 498 consensus_7781#1 ------------------------------------------------------------ consensus_7781#0 CATGTAGTGTTGGCTGTGGTGTCAATAATACATCTATCATACCCAATCTGCCTACAGCAA 558 consensus_7781#1 ------------------------------------------------------------ consensus_7781#0 ATACTATGCAATCTCCTCTAACAGTAATTAGTTCTGGTCGCCCAGTTAATCAAATGCCAG 618 consensus_7781#1 ------------------------------------------------------------ consensus_7781#0 ATCTCATTTCAGATCAAGTTCATTTGTTTGCTACATTGCATCAATTCGGTTTAGCTAACT 678 consensus_7781#1 ------------------------------------------------------------ consensus_7781#0 TTCAATCATATTTTTCATCAATTTTGGCTCCATTACCAAAT 719 consensus_7781#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||