cluster # 7783

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Schistosoma mansoni
cluster # 7783 cluster # 7783 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7783#0 length = 579 sequences # 2

consensus_7783#1 length = 424 sequences # 2
consensus_7783#2 length = 279 sequences # 1

consensusID : consensus_7783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 579
fasta sequence

                              [TGACGAATAGTTCGACCACCTCGGCCAATAATCGAACCAACTAATGATGTGCTAAGTAACAATCTAAAAAAAAATTAAAAAAATAAATACAACATATTCTAAACTATACAATGGATGATAAATTCGTAGTTGTTCTATTTATCTTCGAAATAGTTTAAGATGGACAACTGTAGTTCAGTATCCAAAGATGCTATGAATACTAGGAGGGTTGCATTGTTCTAGACACTAGTACAGTTATGAAAAGAACATATTTTTAGGTAATGGTGATCAATCAATATTCGCTATTGCGATGCTTCTATGAGGATGGTATATTGTTGACCCAGTGTAGTATATTTTCTTGGTACATAAAGGTGGATAAATATATTACCTATGCCAAAAGTAGTATCCCATGATTGTAGAGATCCAATCAAAATGGCATACTGGTGGTTACAAAGATGAGCAGATAACTGAGTCGCCATTGTAGCGCCAGTACATAAGTATATACGGACGGTATGTAATTGTTACAAACGTCATCTCTGAAATTGTAGATCATAACAATCTCAACANAATATTACAACCACCAGCGATTTATTGTAAACG]

[+] EMBL CD133728             [TGACGAATAGTTCGACCACCTCGGCCAATAATCGAACCAACTAATGATGTGCTAAGTAACAATCTAAAAAAAAATTAAAAAAATAAATACAACATATTCTAAACTATACAATGGATGATAAATTCGTAGTTGTTCTATTTATCTTCGAAATAGTTTAAGATGGACAACTGTAGTTCAGTATCCAAAGATGCTATGAATACTAGGAGGGTTGCATTGTTCTAGACACTAGTACAGTTATGAAAAGAACATATTTTTAGGTAATGGTGATCAATCAATATTCGCTATTGCGATGCTTCTATGAGGATGGTATATTGTTGACCCAGTGTAGTATATTTTCTTGGTACATAAAGGTGGATAAATATATTACCTATGCCAAAAGTAGTATCCCATGATTGTAGAGATCCAATCAAAATGGCATACTGGTGGTTACAAAGATGAGCAGATAACTGAGTCGCCATTGTAGCGCCAGTACATAAGTATATACGGACGGTATGTAATTGTTACAAACGTCATCTCTGAAATTGTAGATCATAACAATCTCAACANAATATTACAACCACCAGCGATTTATTGTAAACG]
[+] EMBL CD133762             [TGACGAATAGTTCGACCACCTCGGCCAATAATCGAACCAACTAATGATGTGCTAAGTAACAATCTAAAAAAAAATTAAAAAAATAAATACAACATATTCTAAACTATACAATGGATGATAAATTCGTAGTTGTTCTATTTATCTTCGAAATAGTTTAAGATGGACAACTGTAGTTCAGTATCCAAAGATGCTATGAATACTAGGAGGGTTGCATTGTTCTAGACACTAGTACAGTTATGAAAAGAACATATTTTTAGGTAATGGTGATCAATCAATATTCGCTATTGCGATGCTTCTATGAGGATGGTATATTGTTGACCCAGTGTAGTATATTTTCTTGGTACATAAAGGTGGATAAATATATTACCTATGCCAAAAGTAGTATCCCATGATTGTAGAGATCCAATCAAAATGGCATACTGGTGGTTACAAAGATGAGCAGATAACTGAGTCGCCATTGTAGCGCCAGTACATAAGTATATACGGACGGTATGTAATTGTTACAAACGTCATCTCTGAAATTGTAGATCATAACAATCTCAACAAAATAT                            ]




>consensus_7783#0
TGACGAATAGTTCGACCACCTCGGCCAATAATCGAACCAACTAATGATGTGCTAAGTAAC
AATCTAAAAAAAAATTAAAAAAATAAATACAACATATTCTAAACTATACAATGGATGATA
AATTCGTAGTTGTTCTATTTATCTTCGAAATAGTTTAAGATGGACAACTGTAGTTCAGTA
TCCAAAGATGCTATGAATACTAGGAGGGTTGCATTGTTCTAGACACTAGTACAGTTATGA
AAAGAACATATTTTTAGGTAATGGTGATCAATCAATATTCGCTATTGCGATGCTTCTATG
AGGATGGTATATTGTTGACCCAGTGTAGTATATTTTCTTGGTACATAAAGGTGGATAAAT
ATATTACCTATGCCAAAAGTAGTATCCCATGATTGTAGAGATCCAATCAAAATGGCATAC
TGGTGGTTACAAAGATGAGCAGATAACTGAGTCGCCATTGTAGCGCCAGTACATAAGTAT
ATACGGACGGTATGTAATTGTTACAAACGTCATCTCTGAAATTGTAGATCATAACAATCT
CAACANAATATTACAACCACCAGCGATTTATTGTAAACG

consensusID : consensus_7783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence

                              [TTGTAATCTGACGAATAGTTCGACCACCTCGGCCAACAATCGAACCAACTAATGATGTGCTAAGTAACAATCTTGTTGGATATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAACTAGCTATCAGATTTTCAGGAAGACCTTGTACATAACTAGACAGTAGGTTATTATTGGCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTGCTTATTAGCCTGGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATGGGTGGGTTTTGTATTCAGTTGGTGGTTTGGATTAAGGTCCTGGTTAGCTGTCGATAAGGAAGATATGAAACCTTGACTACCTGAGGATAAAAAACTCGACGTTGTTTGAACAGTAAAAGAGTTAGTGTTTTTTTC]

[+] EMBL CD163478             [TTGTAATCTGACGAATAGTTCGACCACCTCGGCCAACAATCGAACCAACTAATGATGTGCTAAGTAACAATCTTGTTGGATATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAACTAGCTATCAGATTTTCAGGAAGACCTTGTACATAACTAGACAGTAGGTTATTATTGGCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTGCTTATTAGCCTGGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATGGGTGGGTTTTGTATTCAGTTGGTGGTTTGGATTAAGGTCCTGGTTAGCTGTCGATAAGGAAGATATGAAACCTTGACTACCTGAGGATAAAAAACTCGACGTTGTTTGAACAGTAAAAGAGTTAGTGTTTTTTTC]
[+] EMBL CD163524             [TTGTAATCTGACGAATAGTTCGACCACCTCGGCCAATAATCGAACCAACTAATGATGTGCTAAGTAACAATCCTGTTGGACATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAACTAGCTATCAGATTTTCAGGAAGACCTTGTACAAAACTAGACAGTAGGTTATTATTGGCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTGCTTATTAGCCTGGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATGGGTGGGTTTTGTATTCAGTTGGTGGTTTGGATTAAAGTCCTGGTTAGCTGTCGATAAGGAAGATATGAAACCTTGACTACCTGAGGATAAAAAACTCGACGTTGTTTGAACAGTAAAAGAGTTAGTGTTTTTTTC]




>consensus_7783#1
TTGTAATCTGACGAATAGTTCGACCACCTCGGCCAACAATCGAACCAACTAATGATGTGC
TAAGTAACAATCTTGTTGGATATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAAC
TAGCTATCAGATTTTCAGGAAGACCTTGTACATAACTAGACAGTAGGTTATTATTGGCAA
GAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTGCTTATTAGCCT
GGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATGGGTGGGTTTTG
TATTCAGTTGGTGGTTTGGATTAAGGTCCTGGTTAGCTGTCGATAAGGAAGATATGAAAC
CTTGACTACCTGAGGATAAAAAACTCGACGTTGTTTGAACAGTAAAAGAGTTAGTGTTTT
TTTC

consensusID : consensus_7783#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [AACGATACCCGGGGGGGGAGATCTTGTTGGACATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAACTAGCTATCAGATTTTCAGGAAGACCTTGTACATAACTAGACAGTAGGTTATTATTGGCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTGCTTATTAGTCTGGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATGGGTGGGTTTTGTATTCAGTTGGTGGTATGGATTAAAGTC]

[+] EMBL CD060066             [AACGATACCCGGGGGGGGAGATCTTGTTGGACATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAACTAGCTATCAGATTTTCAGGAAGACCTTGTACATAACTAGACAGTAGGTTATTATTGGCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTGCTTATTAGTCTGGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATGGGTGGGTTTTGTATTCAGTTGGTGGTATGGATTAAAGTC]




>consensus_7783#2
AACGATACCCGGGGGGGGAGATCTTGTTGGACATGAATCAAGAACCAAGCGAAAACCACT
TAATTTCAAACTAGCTATCAGATTTTCAGGAAGACCTTGTACATAACTAGACAGTAGGTT
ATTATTGGCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAACACACTG
CTTATTAGTCTGGTTTACCGTCCCATGAACATTTGTATAGGCCTGTGGATAGTCGAAATG
GGTGGGTTTTGTATTCAGTTGGTGGTATGGATTAAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7783#1      TTGTAATCTGACGAATAGTTCGACCACCTCGGCCAACAATCGAACCAACTAATGATGTGC 60
consensus_7783#2      --------------------------------------------------AACGATACCC 10
consensus_7783#0      --------TGACGAATAGTTCGACCACCTCGGCCAATAATCGAACCAACTAATGATGTGC 52
                                                                        ** ***   *

consensus_7783#1      TAAGTAACA-ATCTTGTTGGATATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAA 119
consensus_7783#2      GGGGGGGGAGATCTTGTTGGACATGAATCAAGAACCAAGCGAAAACCACTTAATTTCAAA 70
consensus_7783#0      TAAGTAACA-ATCT----AAAAAAAAATTAAAAA---AATAAATACAACATA-TTCTAAA 103
                         *    * ****      * *  *** ** **   *   ** ** ** ** **  ***

consensus_7783#1      CTAGCTATCAGATTTTCAG---GAAGACCTTGTACATAACTAGACAGTAGGTTATTATTG 176
consensus_7783#2      CTAGCTATCAGATTTTCAG---GAAGACCTTGTACATAACTAGACAGTAGGTTATTATTG 127
consensus_7783#0      CTATACAATGGATGATAAATTCGTAGTTGTTCTATTTATCTTCGAAATAGTTTAAGATGG 163
                      ***   *   ***  * *    * **   ** **  ** **    * *** ***  ** *

consensus_7783#1      GCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAA--CACACTGCTTAT 234
consensus_7783#2      GCAAGAGATGATTGATAATTTTGCAAATGTTTTGGTGGTCCTCCAA--CACACTGCTTAT 185
consensus_7783#0      ACAACTGTAGTTCAGTA--TCCAAAGATGCTATGAATACTAGGAGGGTTGCATTGTTCTA 221
                       ***  *  * *   **  *    * *** * **                ** ** *   

consensus_7783#1      TAGCCTGGTTTA-CCGTCCCATGAACATTTGTATAGGC--CTGTGGATAGTCGAAATGGG 291
consensus_7783#2      TAGTCTGGTTTA-CCGTCCCATGAACATTTGTATAGGC--CTGTGGATAGTCGAAATGGG 242
consensus_7783#0      GACACTAGTACAGTTATGAAAAGAACATATTTTTAGGTAATGGTGATCAATCAATATTCG 281
                       *  ** **  *    *   * ****** * * ****     ***   * ** * **  *

consensus_7783#1      TGGGT------TTTGTATTCAGTTGGTGGTTTG--GATTAAGGTCCTGGTTAGCTGTCGA 343
consensus_7783#2      TGGGT------TTTGTATTCAGTTGGTGGTATG--GATTAAAGTC--------------- 279
consensus_7783#0      CTATTGCGATGCTTCTATGAGGATGGTATATTGTTGACCCAGTGTAGTATATTTTCTTGG 341
                          *       ** ***   * ****    **  **   *                   

consensus_7783#1      TAAGGAAGATATGAAACCTTGACTACCTGAGGATAAAAAACTCGACGTTGTTTGAACAGT 403
consensus_7783#2      ------------------------------------------------------------
consensus_7783#0      TACATAAAGGTGGATAAATATATTACCTATGCCAAAAGTAGTATCCCATGATTGTAGAGA 401
                                                                                  

consensus_7783#1      AAAAGAGTTAGTGTTTTTTTC--------------------------------------- 424
consensus_7783#2      ------------------------------------------------------------
consensus_7783#0      TCCAATCAAAATGGCATACTGGTGGTTACAAAGATGAGCAGATAACTGAGTCGCCATTGT 461
                                                                                  

consensus_7783#1      ------------------------------------------------------------
consensus_7783#2      ------------------------------------------------------------
consensus_7783#0      AGCGCCAGTACATAAGTATATACGGACGGTATGTAATTGTTACAAACGTCATCTCTGAAA 521
                                                                                  

consensus_7783#1      ----------------------------------------------------------
consensus_7783#2      ----------------------------------------------------------
consensus_7783#0      TTGTAGATCATAACAATCTCAACANAATATTACAACCACCAGCGATTTATTGTAAACG 579