These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 646 fasta sequence [GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAACACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCACTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCATTCTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGCCAACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTGATAACTGGGG] [+] EMBL CD190322 [GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAACACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCACTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCATTCTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGCCAACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTGATAACTGGGG] [-] EMBL CD190532 [GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAACACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCACTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCTCTGAATGTAGCACTAAAAAGCAACGTTAGACGACGTTTCGGAAG ] [+] EMBL CD147601 [ CAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAAAAGCAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATTATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATA ] consensusID : consensus_7785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [AAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTTCCAAAATCACTGGAATGCAGCCTTCTTGAACTTCCGTAGGTTTATTAATCCCTTTATCTCTTAGCAACTCAACAATTTCAGGACATGCACCAAGTTCTTCAAAAGTCATTTAGATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCAATTCTAAGTATCAGGTTTATTTAATAATGAGAATAGACGACAATCTTGTGGTAAGAACATTACACGTTGTAGCGTCACTTCTGACCTCGTGC] [-] EMBL CD083389 [AAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTTCCAAAATCACTGGAATGCAGCCTTCTTGAACTTCCGTAGGTTTATTAATCCCTTTATCTCTTAGCAACTCAACAATTTCAGGACATGCACCAAGTTCTTCAAAAGTCATTTAGATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCAATTCTAAGTATCAGGTTTATTTAATAATGAGAATAGACGACAATCTTGTGGTAAGAACATTACACGTTGTAGCGTCACTTCTGACCTCGTGC] consensusID : consensus_7785#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCATTAAAAAGTTACAAAAA] [+] EMBL CD195435 [AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATGAACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGGATTAAATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCATTAAAAAGTTACAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7785#0 GTCGCATCAGAATATAATACTGACTTAAGGTCTCGACAGTTACGGCCCCTGCAGATGAAC 60 consensus_7785#2 ------------------------------------------------------------ consensus_7785#1 ---------------------------AAGTCAATACTCTGATGAACTATGCTTCTTC-C 32 consensus_7785#0 ACGTAGTCATGCATTCAGGTTGCCATAAAATAGGAGGGCGTCTGTTTTCAGCGTAGGCCA 120 consensus_7785#2 ------------------------------------------------------------ consensus_7785#1 AC-CAGTTAT-CAC-CAACACGTTACATAGTGGTTCACC--TTGGATTAAATTTAACCCA 87 consensus_7785#0 CTGACTTTGCAGCCTCTAAGGAAGATTTGACTGCACCACTGAATGTAGCACTAAA--AAG 178 consensus_7785#2 ------------------------------------------------------------ consensus_7785#1 GCGGCTT-GTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTATTAGAGCATA 146 consensus_7785#0 CAACGTTTGACGACGTTTCGGAAGTGCTTTTAATATAGTGTTCAGATCTTCGCCAAAATT 238 consensus_7785#2 ------------------------------------------------------------ consensus_7785#1 TAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATGCTGC-----T 201 consensus_7785#0 ATCTTCCAACAATCTATCTGCTTCGTCTAGAACCACCACTTTCGTTCTGGATAAGGTCCA 298 consensus_7785#2 ------------------------------------------------------------ consensus_7785#1 GTTTTTCCAGAACCA----GTTTTGGCACATGCTACTACATCATTTCCTTCCAAAATC-- 255 consensus_7785#0 TTCTGGCTTATTCTCAGTATCAGCTTCTTGTGCGGCTGTCTGGGTGCGCAGAAGATCAGC 358 consensus_7785#2 ------------------------------------------------------------ consensus_7785#1 -ACTGG---------AATGCAGCCTTCTTGAACTTCCG--TAGGTTTAT------TAATC 297 consensus_7785#0 CAACCGTCCAGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATG 418 consensus_7785#2 ---------AGGAGTAGAAACGACAATATGTGGAGATCGAGCTAAGTCAATACTCTGATG 51 consensus_7785#1 CCTTTATCTCTTAGCA-ACTCAACAATTTCAGGACAT-GCACCAAGTT-----CTTCAAA 350 ** * * * ***** * *** ** * * **** * * consensus_7785#0 AACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGG-ATTA 477 consensus_7785#2 AACTATGCTTCTTCCACCAGTTATCACCAACACGTTACATAGTGGTTCACCTTGG-ATTA 110 consensus_7785#1 AGTCAT----------TTAGATCCGAATATCTTGTACTGCACTGGTTAATGTAGATATCA 400 * ** ** * * * * ** * ***** * * * ** * consensus_7785#0 AATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTA 537 consensus_7785#2 AATTTAACCCAGCGGCTTGTTCCCCAATTTGATGCGCCAACTCCCTTGTTGGAGTAATTA 170 consensus_7785#1 ATTCTAAGTATCAGGTTTATTTAATAATGAGAATAGACGACAATCTTGTGGTAAGAAC-A 459 * * *** ** ** ** *** ** * * ** ***** * * ** * consensus_7785#0 TTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATG 597 consensus_7785#2 TTAGAGCATATAATGGTTTGAGTTCCGTCATGAGTGATTGAAGTATGGGGATCAAAAATG 230 consensus_7785#1 TTA---CACGTTGTAGCGTCACTTCTGACCTC-GTGC----------------------- 492 *** ** * * * * * *** * * * *** consensus_7785#0 CTGCTGTTTTTCCAGAACCAGTTTTTGCACATGTTGGTG-ATAACTGGGG---------- 646 consensus_7785#2 CTGCTGTTTTTCCAGAACCAGTTTTGGCACATGCTACTACATCATTTCCTAAAACTGCAT 290 consensus_7785#1 ------------------------------------------------------------ consensus_7785#0 ---------------- consensus_7785#2 TAAAAAGTTACAAAAA 306 consensus_7785#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||