cluster # 7787

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Schistosoma mansoni
cluster # 7787 cluster # 7787 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7787#0 length = 574 sequences # 4

consensus_7787#1 length = 514 sequences # 1

consensusID : consensus_7787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 574
fasta sequence

                              [AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGATTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT-AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTTCAGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTTGACAAAGTAGAAGAAAATGAACCAGTGTCTACCAC]

[-] EMBL CD067045             [AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGATTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCC                                                                                                                                 ]
[+] EMBL CD167069             [                                                                                      ACTACTATTTCTAGCCTAGCAGAAGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAATACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGGAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAAGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCT                                                                                                                                                                                            ]
[-] EMBL CD066477             [                                                                                                CTAGCATAGCAGAGGGAAGTCACAAACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATGATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGT AAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCC                                                                                                                                 ]
[-] EMBL CD149170             [                                                                                                                                                                                                                   CTCTCTACCATGTCTGGTGCAAGATCATATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATTATTTGGCTCTTGCCTACAACTGTAGTAAAAAAATACACTGAATGCTCTGCTCTTCTTACAAGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGACTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTTCAGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTTGACAAAGTAGAAGAAAATGAACCAGTGTCTACCAC]




>consensus_7787#0
AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGA
TTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACA
AACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAAGAACTGTCTCGTCTGTATG
ATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCATA
TTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTATT
ATTTGGCTCTTGCCTACAACTGTAGTAAAAAATACACTGAATGCTCTGCTCTTCTTACAA
GGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGGA
CTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTTC
AGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTTG
ACAAAGTAGAAGAAAATGAACCAGTGTCTACCAC

consensusID : consensus_7787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [GTAATATTAAATTTGAGCACTAATCCACGTTATAGTATACGAGAAGAATATACCAGAAGAGAAATATGATTCAACCTGAAGTACACAATAACTAAAATACAGTACCAATATCTGTATGAAAACGGAAAGAACGATCAAACCTATAGACAAAGTAGTATCACAACACCATATTTAAGATTCTGTTGGCTCTGAACCTCGCCATAGCCATCCACGCATAAGACCTGTAAGACCAGAAGATTTGGAAGGTGCACTAGCCTTTAGACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATTTAAAGCAAGGTCAAAGAAAATTGGTTTCACAGGGACAGGATGAAACTTGGGAGGTAGATGAACAAAGGGATAAACAAAGTTATTGAATGATTTCTCGACAGATTTCTCGTCCGCATAGATATCCAGGCGGTCAATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAAGGGGGAGTGGTAGACACTGGGTTCATTTTCTTCTACTT]

[+] EMBL BF936615             [GTAATATTAAATTTGAGCACTAATCCACGTTATAGTATACGAGAAGAATATACCAGAAGAGAAATATGATTCAACCTGAAGTACACAATAACTAAAATACAGTACCAATATCTGTATGAAAACGGAAAGAACGATCAAACCTATAGACAAAGTAGTATCACAACACCATATTTAAGATTCTGTTGGCTCTGAACCTCGCCATAGCCATCCACGCATAAGACCTGTAAGACCAGAAGATTTGGAAGGTGCACTAGCCTTTAGACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATTTAAAGCAAGGTCAAAGAAAATTGGTTTCACAGGGACAGGATGAAACTTGGGAGGTAGATGAACAAAGGGATAAACAAAGTTATTGAATGATTTCTCGACAGATTTCTCGTCCGCATAGATATCCAGGCGGTCAATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAAGGGGGAGTGGTAGACACTGGGTTCATTTTCTTCTACTT]




>consensus_7787#1
GTAATATTAAATTTGAGCACTAATCCACGTTATAGTATACGAGAAGAATATACCAGAAGA
GAAATATGATTCAACCTGAAGTACACAATAACTAAAATACAGTACCAATATCTGTATGAA
AACGGAAAGAACGATCAAACCTATAGACAAAGTAGTATCACAACACCATATTTAAGATTC
TGTTGGCTCTGAACCTCGCCATAGCCATCCACGCATAAGACCTGTAAGACCAGAAGATTT
GGAAGGTGCACTAGCCTTTAGACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATT
TAAAGCAAGGTCAAAGAAAATTGGTTTCACAGGGACAGGATGAAACTTGGGAGGTAGATG
AACAAAGGGATAAACAAAGTTATTGAATGATTTCTCGACAGATTTCTCGTCCGCATAGAT
ATCCAGGCGGTCAATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAAGGGG
GAGTGGTAGACACTGGGTTCATTTTCTTCTACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7787#0      AGGTTTCACGACTCCAGCTTTTGTACACTTATTTACAATACTTGAAATTATCTAAGACGA 60
consensus_7787#1      ----------------GTAATATTAAATTTGA--GCACTAATCCACGTTATAGTATACGA 42
                                      *   *  ** * **     ** ** *  *  ****   * ****

consensus_7787#0      TTGATCGAACACTTCTACATATTGAAACTACTATTTCTAGCCTAGCAGAGGGAAGTCACA 120
consensus_7787#1      ------GAAGAATATACCAGAAGAGAAATATGATTC--AACCT----GAAGTACACAATA 90
                            *** * *    ** *    ** **  ***   * ***    ** * *    * *

consensus_7787#0      AACGAAATCAACTTGCTACTAGTGCTTATCCTAAACCACAA-GAACTGTCTCGTCTGTAT 179
consensus_7787#1      ACTAAAATA----CAGTACCAATATCTGTATGAAAACGGAAAGAACGATCAAACCTATA- 145
                      *   ****        *** * *   * *   *** *  ** ****  **    ** ** 

consensus_7787#0      GATACTTTAGTACAAAATTTTCAAGAGATTATCTCTCTACCATGTCTGGTGCAAGATCAT 239
consensus_7787#1      GACAAAGTAGTATCACAACACCATA--TTTAAGATTCTGTTGGCTCTGA-ACCTCGCCAT 202
                      ** *   *****  * *    **     ***    ***      ****   *     ***

consensus_7787#0      ATTGGTTTGAAGGATCTATTGTATGCAAAAATGCTGTCTTATCGTAGTTATAGGTGCTAT 299
consensus_7787#1      AGCCATCC-ACGCATAAGACCTGTAAGACCAGAAGATTTGGAAGGTGCACTAGCCTTTAG 261
                      *    *   * * **      * *   *  *     * *    *  *   ***    ** 

consensus_7787#0      TATTTGGCTCTTGCCTACAACTGTAGTAAAAAATACACTGAATGCTCTGCTCTTCTTACA 359
consensus_7787#1      ACCTATTTTGTCGTCCAAAGATGGAAAATTAATATGATTTAAAGCAAGG----TCAAAGA 317
                         *    * * * * * *  ** *  *  **    * * ** **   *    **  * *

consensus_7787#0      AGGGCTATTCAACATGCCGAAAAAGCTGTCACTTCTCTTGAACATTCCATTTCAACCTGG 419
consensus_7787#1      AAATTGGTTTCACA---GGGACAGGATGAAACTTGGGAGGTAGATG--AACAAAGGGATA 372
                      *      **  ***    * * * * **  ****     * * **   *    *      

consensus_7787#0      ACTAAAGCTGAGGAATGTATTGCGCCTGGTCCCAGTCCTGATGCCCTATCAAAATCTCTT 479
consensus_7787#1      AACAAAGTTATTGAATGATTT----CTCGACAGATTTCTCGT-CCGCATAGATATCCAGG 427
                      *  **** *   *****  **    ** * *  * * **  * **  **  * ***    

consensus_7787#0      CAGTCGCTTATATTACAAGCTGAGTCAGAAGATTTCACTTGCAAAGCAGCCTCGATGCTT 539
consensus_7787#1      CGGTC------AATAAGAACTTTTCGTGAAGCATCTACTCCTGTAGTACCAGCAA----- 476
                      * ***      * **  * **      ****  *  ***     ** * *  * *     

consensus_7787#0      GACAAAGTAGAAGAAAATGAAC-CAGTGTCTACCAC-- 574
consensus_7787#1      GGGGGAGTGGTAGACACTGGGTTCATTTTCTTCTACTT 514
                      *    *** * *** * **    ** * *** * **