|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1178 fasta sequence
[TGAGGCAACCCCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATAAAATTAGTGAACAAATTTTAAAAGACCATACATTTNGCATTTAGTTCTGATATATCATGTATAACTACACAAGGTTTTTTAACTAATGAAATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCGTCTTCTTGGTCTTGGTCTTCTTCTTCTTCTACTACTACTTCTACCACTGCTAATTCTTCTGGTGTATTAGATTCTACATTGAATAGTCTAAATTCAAGTCTTTATTCACCTACTACAAATAATACTACAATATGTAGTACAACCATTAATACAACAAATTATTCTGGTACATCTACTCCTTCTGATGTGAATACTATATTAGCAGCTGAAATATCTGGTTATGCATCAGTACTTCAGTTAGCTTATCGATTATGTCCAACAGTTTGGGACTCTCGTGGACCGTTAGTTCCACTTGACTGGATTTTACAAAGATGCAGTGAATTAGCTGCATCGAGATCCCAAACTGGTGTAGCTGATAGTTCCAGTAAATAAATGAATAAAACTTGATCAATATGGAATTCTAAACATCTTTAAATTATGTTATGATAGAATTCTTATTGAGATTCATGCATTATTGAAATATCTTGTATTCAGTTGACTTTCTATGATGTTATCTCTTGTACATTGATGTTTAAATTCTTTAAGAATACACATTT]
[+] EMBL CD082129 [TGAGGCAACCCCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATAAAATTAGTGAACAAATTTTAAAAGACCATACATTTNGCATTTAGTTCTGATATATCATGTATAACTACACAAGGTTTTTTAACTAATGAAATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCGTCTTCTTGGTCTTGGTCTTCTTCTTCTTCTACTACT ]
[-] EMBL CD075744 [ AAATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCGTCTTCTTGTTCTTGTTCTTCTTCTTCTTCNACNACTACTTCTACCACTGCTAATTCTTCTGGTGTATTAGATTCTACATTGAATAGTCTAAATTCAAGTCTTTATTCACCTACTACAAATAATACTACAATATGTAGTACAACCATTAATACAACAAATTATTCTGGTACATCTACTCCTTCTGATGTGAATACTATATTAGCAGCTGAAATATCTGGTTATGCATCAGTACTTCAGTTAGCTTATCGATTATGTCCAACAGTTTGGGACTCTCGTGGACCGTTAGTTCCACTTGACTGGATTTTACAAAGATGCAGTGAATTAGCTGCATCGAGATCCCAAACTGGTGTAGCTGATAGTTCCAGTAAATAAATGAATAAAACTTGATCAATATGGAATTCTAAACATCTTTAAATTATGTTATGATAGAATTCTTATTGAGATTCATGCATTATTGAAATATCTTGTATTCAGTTGACTTTCTATGATGTTATCTCTTGTACATTGATGTTTAAATTCTTTAAGAATACACATTT]
consensusID : consensus_7794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 750 fasta sequence
[TTGATCTCGTGTCACCTGATCCAAAAATAATAGTGAATGAAGAGGAATCTACAAATTTACGGGAGCCATCGTCATAACGTTCATCGATTAGTGAATGTGCCAATAAGCTAGGTTTATGGAAAAAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTCATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAG-GC-GTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATANAATTAGTGAACAAATTTTANAAGACCATACATTTGCATTTAGTTCTGATGTATCATGTA]
[-] EMBL CD165899 [TTGATCTCGTGTCACCTGATCCAAAAATAATAGTGAATGAAGAGGAATCTACAAATTTACGGGAGCCATCGTCATAACGTTCATCGATTAGTGAATGTGCCAATAAGCTAGGTTTATGGAAAAAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTCATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATT ]
[+] EMBL CD065207 [ AAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTCATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGGTATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAG GC GTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATANAATTAGTGAACAAATTTTANAAGACCATACATTTGCATTTAGTTCTGATGTATCATGTA]
[+] EMBL CD082140 [ CAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGAGCAGTTTAGTGCAAATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7794#0 ------------------------------------------------------------
consensus_7794#1 TTGATCTCGTGTCACCTGATCCAAAAATAATAGTGAATGAAGAGGAATCTACAAATTTAC 60
consensus_7794#0 ------------------------------------------------------------
consensus_7794#1 GGGAGCCATCGTCATAACGTTCATCGATTAGTGAATGTGCCAATAAGCTAGGTTTATGGA 120
consensus_7794#0 ------------------------------------------------------------
consensus_7794#1 AAAAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTC 180
consensus_7794#0 ----------------TGAGGCAACCCCT--ATATTTACATGCTTCACATTTAAAAGATC 42
consensus_7794#1 ATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATC 240
* * ** ** *****************************
consensus_7794#0 CTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCAT 102
consensus_7794#1 CTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCAT 300
************************************************************
consensus_7794#0 CTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTC 162
consensus_7794#1 CTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTC 360
************************************************************
consensus_7794#0 ATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCT 222
consensus_7794#1 ATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCT 420
************************************************************
consensus_7794#0 GGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTT 282
consensus_7794#1 GGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTT 480
************************************************************
consensus_7794#0 CAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAA 342
consensus_7794#1 CAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAA 540
************************************************************
consensus_7794#0 TATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTG 402
consensus_7794#1 TATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTG 600
************************************************************
consensus_7794#0 ATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGT 462
consensus_7794#1 ATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGT 660
************************************************************
consensus_7794#0 TAACTCAATTATCATTATTATTAGCTAATAAAATTAGTGAACAAATTTTAAAAGACCATA 522
consensus_7794#1 TAACTCAATTATCATTATTATTAGCTAATANAATTAGTGAACAAATTTTANAAGACCATA 720
****************************** ******************* *********
consensus_7794#0 CATTTNGCATTTAGTTCTGATATATCATGTATAACTACACAAGGTTTTTTAACTAATGAA 582
consensus_7794#1 CATTTG-CATTTAGTTCTGATGTATCATGTA----------------------------- 750
***** ************** *********
consensus_7794#0 ATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCG 642
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 TCTTCTTGGTCTTGGTCTTCTTCTTCTTCTACTACTACTTCTACCACTGCTAATTCTTCT 702
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 GGTGTATTAGATTCTACATTGAATAGTCTAAATTCAAGTCTTTATTCACCTACTACAAAT 762
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 AATACTACAATATGTAGTACAACCATTAATACAACAAATTATTCTGGTACATCTACTCCT 822
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 TCTGATGTGAATACTATATTAGCAGCTGAAATATCTGGTTATGCATCAGTACTTCAGTTA 882
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 GCTTATCGATTATGTCCAACAGTTTGGGACTCTCGTGGACCGTTAGTTCCACTTGACTGG 942
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 ATTTTACAAAGATGCAGTGAATTAGCTGCATCGAGATCCCAAACTGGTGTAGCTGATAGT 1002
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 TCCAGTAAATAAATGAATAAAACTTGATCAATATGGAATTCTAAACATCTTTAAATTATG 1062
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 TTATGATAGAATTCTTATTGAGATTCATGCATTATTGAAATATCTTGTATTCAGTTGACT 1122
consensus_7794#1 ------------------------------------------------------------
consensus_7794#0 TTCTATGATGTTATCTCTTGTACATTGATGTTTAAATTCTTTAAGAATACACATTT 1178
consensus_7794#1 --------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||