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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1092 fasta sequence
[ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAGCTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATGCCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATCGTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAACGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTTAACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAAACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGTTCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGAAAATACATCTAA]
[-] EMBL AI975282 [ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTC ]
[-] EMBL CD201652 [ TCACGGTACNGAGTTCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTGTAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGAGTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTCGCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACCCTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTCACAGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCA ]
[-] EMBL CD188250 [ GGGGGTCCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACGAAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAAC TTTTCCGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAACTCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAGCTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATGCCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATCGTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAACGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCT ]
[+] EMBL CD155906 [ AAACGTACCACCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATGTCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTTAACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAAACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGTTCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGAAAATACATCTAA]
consensusID : consensus_7796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCTGTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTACAAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAATCGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCGACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACACATAAATGAAATTGTCAAGCCGAA]
[+] EMBL CD156070 [GGATTTGCAACTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAATCCTGTTTCAATATTTAACAACTACAGTTAAATTTAAAACGTAAGTCGAATAGTTTTCCCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAGTTCCATAATCAATTTTCAATGATATATTACAAATTCCCTTATTGTAAATGCAAACAACACATAGATAGACAATACTGTTCACAATTAAATCGTCAGGCTTGACTCTAATATGCAGTACTATTTATATGCATATTTAAAAATATTAGGCCGACCTAGGGAGTTTATGAGTCAGTGATAACAATGAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTGGCAGTGCGATGAATGGCGTACTAGTTGTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATACAAAGTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTGAGATAACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGGTATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACACATAAATGAAATTGTCAAGCCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7796#0 ATCACTCCCTGAGGCTGTATCAACTCCATCATCTGATGTCAATGTATCACGGTACCGAGT 60
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 TCTCATTGGACTACCATATGACTTGGCATTTGTTTGACCTTTGGTTGAAGTATGTTCCTG 120
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 TAACTGCTTGGTACTTGGAACTGATCGAGTACGTGACAAGCTGGAAGACTTTACAGTAGA 180
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 GTCTAGTATTGTTGAATCAACTGCTTCTTCCAGTTTGGGTTGTTTACTGGGTATAGAGTC 240
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 GCCAGTAGTACCATCAGAGCCACGACGATTGTCACAATCATTAACATTATTAGTGGAACC 300
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 CTTTTTATCCTCCTCAGATTGAATTTTCTCAGTGAGAATAACTGATAAATAGTCCTTTAC 360
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 AGGTCGTCCAGGGGGGTTCCAGTTGATGTAAAAATGTGGACACTTTCTTGAAAGAAAACG 420
consensus_7796#1 ------------------------------------------------------------
consensus_7796#0 AAGAGCACGCCAGCTCCATTCATCTTTATTAATCGATTTGTATTCCTCTTCAACTTTTTC 480
consensus_7796#1 --GGATTTGCAA--CTTATGGATCCTAGTTTCCGGCGGTATATAATTGTTCAGCTACTAA 56
* ** * ** *** * ** * * *** * **** ** *
consensus_7796#0 CGCTGGGTCCATTTCCATGATAGCATCTTGAAAATACGAATGAAGATCTGGATTGAAAAC 540
consensus_7796#1 TCCTGTTTCAATATTTAACA-ACTACAGTTAAATTTAAAACGTAAGTC-GAATAGTTTTC 114
*** ** ** * * * * * * *** * ** * * ** * ** * *
consensus_7796#0 TCGCCGTTTGTCCCGACAAGCAGCTAAATTATCCGGGCATACATTCCATAGTTTATCTAG 600
consensus_7796#1 CCTCTCTTTTGCACAATGTTTTGTGATATCCTTCAG-------TTCCATAAT-----CAA 162
* * *** * * * * * ** * * * ******* * *
consensus_7796#0 CTCTCGATTACCAAAACGATAAACTTTCTGACCAGTACGAGTAACTAAAGGATTTATATG 660
consensus_7796#1 TTTTCAATGAT--ATATTACAAATTCCCTTATT-GTAAATGCAAACAACACATAGATAGA 219
* ** ** * * * * *** * ** * *** * ** ** ** ***
consensus_7796#0 CCTTTTCCTAACAGACAACCTAGATTTTTCAGGAGTTCGTATGAATGAAGGGCATCCATC 720
consensus_7796#1 CAATACTGTT---CACAATT--AAATCGTCAGGC-TTGACTCTAATATGCAGTACTATTT 273
* * * **** * * ***** ** *** * * *
consensus_7796#0 GTTCTTCCATCTATTCCAATAACTTTCACGTTCCAGAATGCGTTCTACTGTAGAAACAAA 780
consensus_7796#1 ATATGCATATTTAAAAATATTAGGCCGAC-CTAGGGAGTTTATGAGTCAGTGATAACAAT 332
* ** ** ** * ** * ** * * * ** *****
consensus_7796#0 CGTACCGCCCGAAGAATTGTTTGGACTATTAGAGGATAACAGTCGTAACACTACTTCATG 840
consensus_7796#1 GAAAGAGACCATATAAATAAACGCAATAACTAAAGATAAAAATTG--GCAGTGCGATGAA 390
* * ** * ** * * * ** * ***** * * * ** * *
consensus_7796#0 TCTTTGATTAACCCAAGAGCGCTGATCCTCACTAAGTACTTGATCAATTGTTTTAAATTT 900
consensus_7796#1 TGGCGTACTAGTT-----GTGATAAGAATAAAAAAAGCTTAAATCAATATCTCACAATAC 445
* * ** * * * * * * ** * ****** * ***
consensus_7796#0 AACTGTAGTTGTTAAATATTGAAACAGGATTAGTAGCTGAACAATTATATACCGCCGGAA 960
consensus_7796#1 AAA-GTAGTTCAAAGACTCGGAAACAAAGTCGAAATAACAATAAAAACATATTG--AGAT 502
** ****** * * ****** * * ** ** * *** * **
consensus_7796#0 ACTAGGATCCATAAGTTGCAAATCCAGCAGTTTCTCGCTTGTAAGGTACTTGGAAAATGT 1020
consensus_7796#1 AACGTGATGAGAAGTTTTCAAATAATTCAGTGAGTCAACCAGTTGCAACGTAAAACCTGG 562
* *** * ** ***** **** ** * ** * ** **
consensus_7796#0 TCCGCTGCTACTCTGAGAGCAAATATCACCTTCTTCTATTGCCATTAGTTTAATACTCGA 1080
consensus_7796#1 TATGTACGTGCATCAGTTCAAGCTGTCATACTTTATTACA--CATAAATGAAATTGTCAA 620
* * * * * * *** * * ** *** * * *** ** *
consensus_7796#0 AAATACATCTAA 1092
consensus_7796#1 GCCGAA------ 626
*
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||