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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1593 fasta sequence
[ATGATTTTAATTTTTGTCATAATATATAAAACATAACTTTTCATAAAAAGCAGTACACAATTGTATAATTAAGAAAAAAATTAAAATAAAATGATTGTACTCTCAATGATTCTTAATTCCATCAAATATACTTCTTCGGAATTTATTATGAAGAGCTTTTAGGATGGGAAATATGTACAGAAAGCTAAATTGGAACTAGTTATTCGTTAAGGAACTTATATCAACTAGGGAACATTGAGAACAAGCATGAGGTACTATTGTTTGAATAAATTGGTTTCACTAGTTCAGAATTTGGACTCTACCTTTATCAGTCAATAATGTATAAAATAGAAAATTTCTCAGTAGCAAACTTAGCCATAGAGATCTATGTGGTGAAAAATTGACATTTTAGTTACAATCATATGAAGTAAAATGACTGACAACAATTTTCATAGATAAGCATAAAATTATTGACTAATGATAAAGATTTCAAAGAAAAAAGTTGCTGTTCGTACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGAGCTTTATGNACATATATATATATATATATATATATATATATATATATA-TATATATGGGGTATGGTGATAAATTGTTGAAATGCATTATTCTCCTTCACATGGATCAGTTGAAGATGTCGATGCAAAAAAAAAATTGCGTTGAGCTTGAAGACGCCTACTTCTTCTTCGTGTTGATGTAATTATCATGACTGACATCAATAATATTCAATGTCTGCATATCATTAACCATCATTTCCGTTGCATCACTATCATCCGATGAATAATTGTCAACAGTCTTTGTCAACATCTTTGGAACTACACCCATTTCATCATTATCCGATTTCATTTGTACAGATTGTTTTGTGGAAATGTTCGATGAAGTCCTTGTTTTACGTTGATTTCTTTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAATATCTTGTGATTTCGAAGTTAAATAAATGGAGTCTTTTCCAGTTGGTTTTCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTATAAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATTGAAACGAACTTTATTTATTTTCAACATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCACAATTAGGTGAAGGGAAAAGAAAGAGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGGCGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACGCCTCGTACCGAA]
[+] EMBL CD075815 [ATGATTTTAATTTTTGTCATAATATATAAAACATAACTTTTCATAAAAAGCAGTACACAATTGTATAATTAAGAAAAAAATTAAAATAAAATGATTGTACTCTCAATGATTCTTAATTCCATCAAATATACTTCTTCGGAATTTATTATGAAGAGCTTTTAGGATGGGAAATATGTACAGAAAGCTAAATTGGAACTAGTTATTCGTTAAGGAACTTATATCAACTAGGGAACATTGAGAACAAGCATGAGGTACTATTGTTTGAATAAATTGGTTTCACTAGTTCAGAATTTGGACTCTACCTTTATCAGTCAATAATGTATAAAATAGAAAATTTCTCAGTAGCAAACTTAGCCATAGAGATCTATGTGGTGAAAAATTGACATTTTAGTTACAATCATATGAAGTAAAATGACTGACAACAATTTTCATAGATAAGCATAAAATTATTGACTAATGATAAAGATTTCAAAGAAAAAAGTTGCTGTTCGTACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGAGCTTTATGNACATATATATATATATATATATATATATATATATATATATTATATATGGGG ]
[+] EMBL CD073809 [ ACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGAGCTTTATGTACATATATATATATATATATATATATATATATATATATA TATATATTATATATGGTGATAAATTGTTGAAATGCATTATTCTCCTTCACATGGATCAGTTGAAGATGTCGATGCAAAAAAAAAATTGCGTTGAGCTTGAAGACGCCTACTTCTTCTTCGTGTTGATGTAATTATCATGACTGACATCAATAATATTCAATGTCTGCATATCATTAACCATCATTTCCGTTGCATCACTATCATCCGATGAATAATTGTCAACAGTCTTTGTCAACATCTTTGGAACTACACCCATTTCATCATTATCCGATTTCATTTGTACAGATTGTTTTGTGGAAATGTTCGATGAAGTCCTTGTTTTACGTTGATTTCTTTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAATATCTTGTGATTTCGAAGTTAAATAAATGGAGTCTTTTCCAGTTGGTTTTCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTATAAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATT ]
[-] EMBL CD082203 [ TTCTNTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAATATCTTGTGATTTCGAAGTTAAATAAATGGAGTCTTTTCCAGTTGGTTTTCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTATAAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATTGAAACGAACTTTATTTATTTTCAACATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCACAATTAGGTGAAGGGAAAAGAAAGAGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGGCGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACGCCTCGTACCGAA]
consensusID : consensus_7798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1032 fasta sequence
[AACATATTGTTATTGGAGGTTTGCATTTTTAGTTTTTGTTGAAAAAGAAGTACAGGTCAAATGTGAGCATTTCTCTCCATGATCATAAAATTGGATCAAAAAGATTTGTTAGCTTAAGCGCGAATTTTTTCGTGTGAGTATTTCTATACGGGCACAAAAATTTCAAGTCGTGATATCATTAACATTCTTTCCGTTGCTTCACGTTCATCGGATGAATAATGATCAACAGTGTTTGTCAACTTCTTTGAAAGTACACCCATTTCATCATTATCGGATTTCTATTGTACAAATTGCTTTGTGATAATGTTCGATAAAGTCCTTGTTTTACGTTGATTCCTTTAAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAAGTATGTTGTGATTTCCAAGGTTGAATCAATGGAGTCTTTTCCAGTTGGTTTTCAATTTAATAAAATATGGAAGCTTTGGCAATATAATTGTTCCACACATATAAATTGTATAAACCGTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGCATTTGGATTGAAACGAACTTTATTTATTTTCACCATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCGCAATTAGGTGAAGGGAAAAGAAAGTGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCACAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGACGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACTGACATAATGGTATTATCATTTTCCATACCCGAT]
[-] EMBL CD079543 [AACATATTGTTATTGGAGGTTTGCATTTTTAGTTTTTGTTGAAAAAGAAGTACAGGTCAAATGTGAGCATTTCTCTCCATGATCATAAAATTGGATCAAAAAGATTTGTTAGCTTAAGCGCGAATTTTTTCGTGTGAGTATTTCTATACGGGCACAAAAATTTCAAGTCGTGATATCATTAACATTCTTTCCGTTGCTTCACGTTCATCGGATGAATAATGATCAACAGTGTTTGTCAACTTCTTTGAAAGTACACCCATTTCATCATTATCGGATTTCTATTGTACAAATTGCTTTGTGATAATGTTCGATAAAGTCCTTGTTTTACGTTGATTCCTTTAAACTGAATTTCTGTTCAATGAATTCACTGGTCTACCAAGAACAAGTATGTTGTGATTTCCAAGGTTGAATCAATGGAGTCTTTTCCAGTTGGTTTTCAATTTAATAAAATATGGAAGCTTTGGCAATATAATTGTTCCACACATATAAATTGTATAAACCGTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGCATTTGGATTGAAACGAACTTTATTTATTTTCACCATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTACTTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGATTGATCAGTTCCACAATGTTCGCAATTAGGTGAAGGGAAAAGAAAGTGTTGAAGCTCTGCATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGTTGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCACAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCA ]
[-] EMBL CD078050 [ GGTAGAAGAGGCACTATTAGTCAGTACAAAATCGATTTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATCCACTGATTCTTCCAATTTTTCTTCAGTTTTTGACGAGTTACAGTGAGCAAATTCTTCTGATGGGCGTTTTTCCATAGACCACTGACATAATGGTATTATCATTTTCCATACCCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7798#0 ATGATTTTAATTTTTGTCATAATATATAAAACATAACTTTTCATAAAAAGCAGTACACAA 60
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 TTGTATAATTAAGAAAAAAATTAAAATAAAATGATTGTACTCTCAATGATTCTTAATTCC 120
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ATCAAATATACTTCTTCGGAATTTATTATGAAGAGCTTTTAGGATGGGAAATATGTACAG 180
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AAAGCTAAATTGGAACTAGTTATTCGTTAAGGAACTTATATCAACTAGGGAACATTGAGA 240
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ACAAGCATGAGGTACTATTGTTTGAATAAATTGGTTTCACTAGTTCAGAATTTGGACTCT 300
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 ACCTTTATCAGTCAATAATGTATAAAATAGAAAATTTCTCAGTAGCAAACTTAGCCATAG 360
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AGATCTATGTGGTGAAAAATTGACATTTTAGTTACAATCATATGAAGTAAAATGACTGAC 420
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 AACAATTTTCATAGATAAGCATAAAATTATTGACTAATGATAAAGATTTCAAAGAAAAAA 480
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GTTGCTGTTCGTACAATTATTTATTGAATACAAATCATAATCTGTTTATATATATGGAGA 540
consensus_7798#1 ------------------------------------------------------------
consensus_7798#0 GCTTTATGNACATATATATATATATATATATATATATATATATATATATATATATGGGGT 600
consensus_7798#1 --------AACATATTGTTAT-TGGAGGTTTGCATTTTTAGTTTTTGTTGAAAAAGAAGT 51
****** *** * * * * ** * ** * * * * * * **
consensus_7798#0 ATGGTGATAAATTGTTGAAATGCATTATTCTCCTTCACATGGATCAGTTGAAGATGTCGA 660
consensus_7798#1 ACAG--GTCAAATGTGA----GCATTTCTCTCCAT------GATCA--TAAAATTG--GA 95
* * * ** *** ***** ***** * ***** * ** ** **
consensus_7798#0 TGCAAAAAAAAAATTGCGTTGAGCTTGAAGACGCCTACTTCTTCTTCGTGTTGATGTAAT 720
consensus_7798#1 TCAAAAAGATTTGTTAGCTTAAGCGCGAA-----------TTTTTTCGTGTGAGTATTTC 144
* **** * ** ** *** *** ** ******* * *
consensus_7798#0 TATCATGACTGACATCAATAATATTCAATGTCTGCATATCATTAACCATCATTTCCGTTG 780
consensus_7798#1 TAT----ACGGGCA-CAAAAAT-TTCAA-GTCGTGATATCATTAAC-ATTCTTTCCGTTG 196
*** ** * ** *** *** ***** *** *********** ** *********
consensus_7798#0 CATCACTATCATCCGATGAATAATTGTCAACAGTCTTTGTCAACATCTTTGGAACTACAC 840
consensus_7798#1 CTTCACGTTCATCGGATGAATAATGATCAACAGTGTTTGTCAACTTCTTTGAAAGTACAC 256
* **** ***** ********** ******** ********* ****** ** *****
consensus_7798#0 CCATTTCATCATTATCCGATTTCATTTGTACAGATTGTTTTGTGGAAATGTTCGATGAAG 900
consensus_7798#1 CCATTTCATCATTATCGGATTTCTATTGTACAAATTGCTTTGTGATAATGTTCGATAAAG 316
**************** ****** ******* **** ****** ********** ***
consensus_7798#0 TCCTTGTTTTACGTTGATTTCTTTTAACTGAATTTCTGTTCAATGAATTCACTGGTCTAC 960
consensus_7798#1 TCCTTGTTTTACGTTGATTCCTTTAAACTGAATTTCTGTTCAATGAATTCACTGGTCTAC 376
******************* **** ***********************************
consensus_7798#0 CAAGAACAA-TATCTTGTGATTTCGAAG-TTAAATAAATGGAGTCTTTTCCAGTTGGTTT 1018
consensus_7798#1 CAAGAACAAGTATGTTGTGATTTCCAAGGTTGAATCAATGGAGTCTTTTCCAGTTGGTTT 436
********* *** ********** *** ** *** ************************
consensus_7798#0 TCGATTTAATAGAATATCGAAGCTTTGACAATATAATTGTTCCACACATATAAATTGTAT 1078
consensus_7798#1 TCAATTTAATAAAATATGGAAGCTTTGGCAATATAATTGTTCCACACATATAAATTGTAT 496
** ******** ***** ********* ********************************
consensus_7798#0 AAAACCTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGGATTCGGATTGAAACG 1138
consensus_7798#1 AAACCGTATACTACTGGCTACGGCGATCCATGTTGCACTCGTTGCATTTGGATTGAAACG 556
*** * ************************************** *** ***********
consensus_7798#0 AACTTTATTTATTTTCAACATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTAC 1198
consensus_7798#1 AACTTTATTTATTTTCACCATAGGAGTATTAATGAAATCCAATTCAGGTTTCTTAGGTAC 616
***************** ******************************************
consensus_7798#0 TTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGA 1258
consensus_7798#1 TTTATCCTTTAACAAAATCCGTATTTGATAATTCGACCAAAGCTTATGCCAGCACATAGA 676
************************************************************
consensus_7798#0 TTGATCAGTTCCACAATGTTCACAATTAGGTGAAGGGAAAAGAAAGAGTTGAAGCTCTGC 1318
consensus_7798#1 TTGATCAGTTCCACAATGTTCGCAATTAGGTGAAGGGAAAAGAAAGTGTTGAAGCTCTGC 736
********************* ************************ *************
consensus_7798#0 ATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGT 1378
consensus_7798#1 ATCGTCTAGTTCTCCAACATCCATCTCTGATTTAAGGGCAGAAGTGATGGCGGTACTGGT 796
************************************************************
consensus_7798#0 TGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGAT 1438
consensus_7798#1 TGTAGTAGTATTAGTAGTTGTAGTGGTAGAAGAGGCACTATTAGTCAGTACAAAATCGAT 856
************************************************************
consensus_7798#0 TTTATATTCATTAATAAATGCATTAATATCTATTATGTCATAATCACATGTAGTTAAATC 1498
consensus_7798#1 TTTATATTCATTAATAAATGCATTAATATCTATTATGTCACAATCACATGTAGTTAAATC 916
**************************************** *******************
consensus_7798#0 CACTGATTCTTCCAATTTTTCTTCAGTTTTTGGCGAGTTACAGTGAGCAAATTCTTCTGA 1558
consensus_7798#1 CACTGATTCTTCCAATTTTTCTTCAGTTTTTGACGAGTTACAGTGAGCAAATTCTTCTGA 976
******************************** ***************************
consensus_7798#0 TGGGCGTTTTTCCATAGACCACGCCTCGTACCGAA---------------------- 1593
consensus_7798#1 TGGGCGTTTTTCCATAGACCAC-TGACATAATGGTATTATCATTTTCCATACCCGAT 1032
********************** * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||