cluster # 7799

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Schistosoma mansoni
cluster # 7799 cluster # 7799 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7799#0 length = 761 sequences # 4

consensus_7799#1 length = 418 sequences # 1

consensusID : consensus_7799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 761
fasta sequence

                              [GTTCAGTTGACAGTTAGAGTCTGTGATAATAGAACAACAACCATTGAGCATGTTCAATGTTTTGCTAGATGATGGATAACAATCACCATTTAATTGTGAACATTCAGTGGATTGAGTTAATTTATTTTTAATTGGATGATCATTTTGTTGAGTGTACATTTCAATATGATGAATAGTAATATCATCATTAGTGCTGTTGGATGAAAGTGAATCTATGGGAGAATTTGTCAAATTTACTTCTTCATCCATTTCATTCCAATGATTCAAATGGGATTTATTGTCAGACCAATCCAAACTGTTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCTTCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTAGGATTCGGTGAACTTTTATGTGATAGTTGTTCCGATGAACTGTGATCTGACAAATCGTCCACCTGATTTTCATCTACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCACCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATTCGTAATTCCCAAGTGGCATCGATGAAAGAGTGGGATAATTAATTAATCCACTGTTACGATAAGAATAAAGGGATTTATTGCATGCCATAATGTCGGAATTATCAATTGGACCTGGAGCTTCCCATATTTGTCCTTTGACAAATTGAAGCCATAGATCTAACCATTTTTTACTGACAG]

[+] EMBL CD168384             [GTTCAGTTGACAGTTAGAGTCTGTGATAATAGAACAACAACCATTGAGCATGTTCAATGTTTTGCTAGATGATGGATAACAATCACCATTTAATTGTGAACATTCAGTGGATTGAGTTAATTTATTTTTAATTGGATGATCATTTTGTTGAGTGTACATTTCAATATGATGAATAGTAATATCATCATTAGTGCTGTTGGATGAAAGTGAATCTATGGGAGAATTTGTCAAATTTACTTCTTCATCCATTTCATTCCAATGATTCAAATGGGATTTATTGTCAGACCAATCCAAACTGTTAGAGATACCATCATTTATATGATTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD116035             [                                                                                                                                                                        ATGAATAGTAATATCATCATTAGTGCTGTTGGATGAAAGTGAATCTATGGGAGAATTTGTCAAATTTACTTCTTCATCCATTTCATTCCAATGATTCAAATGGGATTTATTGTCAGACCAATCCAAACTGTTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCTTCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTAGGATTCGGTGAACTTTTATGTGATAGTTGTTCCGATGAACTGTGATCTGACAAATCGTCCACCTGATTTTCATCTACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCACCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATTCGTAATTCCCAAGTGGCATCGATGAAAGAGTGGGATAATTAATTAATCCACTGTTACGATAAGAATANAGGGATTTATTGCATGCCATAATGTCGGAATTATCAATTGGACCTGGAGCTT CCATATTTGTCCTTTGAC                                      ]
[-] EMBL CD168336             [                                                                                                                                                                                                                                                                                                                               TGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCTTCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTAGGATTCGGTGAACTTTTATGTGATAGTTGTTCCGATGAACTGTGATCTGACAAATCGTCCACCTGATTTTCATCTACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCACCATATATATTGAACAGAAGACTCCATACTTCAGTAGAAACATATTCGTAATTCCCAAGTGGCATCGATGAAAGAGTGGGATAATTAATTAATCCACTGTTACGATAAGAATAAAGGGATTTATTGCATGCCATAATGTCGGAATTATCAATTGGACCTGGAGCTTCCCATATTTGTCCTTTGACAAATTGAAGCCATAGATCTAACCATTTTTTACTGACAG]
[-] EMBL CD168347             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAGAAACATATTCGTAATTCCCAAGTGGCATCGATGAAAGAGTGGGATAATTAATTAATCCACTGTTACGATAAGAATAAAGGGATTTATTGCATGCCATAATGTCGGAATTATCAATTGGACCTGGAGCTTCCCATATTTGTCCTTTGACAAATTGAAGCCATAGATCTAACCATTTTTTACTGACAG]




>consensus_7799#0
GTTCAGTTGACAGTTAGAGTCTGTGATAATAGAACAACAACCATTGAGCATGTTCAATGT
TTTGCTAGATGATGGATAACAATCACCATTTAATTGTGAACATTCAGTGGATTGAGTTAA
TTTATTTTTAATTGGATGATCATTTTGTTGAGTGTACATTTCAATATGATGAATAGTAAT
ATCATCATTAGTGCTGTTGGATGAAAGTGAATCTATGGGAGAATTTGTCAAATTTACTTC
TTCATCCATTTCATTCCAATGATTCAAATGGGATTTATTGTCAGACCAATCCAAACTGTT
AGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCTTC
ATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTAGGATTCGGTGAACTTTT
ATGTGATAGTTGTTCCGATGAACTGTGATCTGACAAATCGTCCACCTGATTTTCATCTAC
GCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCACC
ATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATTCGTAATTCCCAAGTGG
CATCGATGAAAGAGTGGGATAATTAATTAATCCACTGTTACGATAAGAATAAAGGGATTT
ATTGCATGCCATAATGTCGGAATTATCAATTGGACCTGGAGCTTCCCATATTTGTCCTTT
GACAAATTGAAGCCATAGATCTAACCATTTTTTACTGACAG

consensusID : consensus_7799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [ATGAATAGTAATATCATCATTAGTGCTGTTGGATGAGAAAGTGAATCTATGGGAGAATTCGCCAAATTTACTTTTCTCTTCATTCAATTCGAGGGATTCACGGGGGATTTATTGCCACACCAATCCAAACTGTTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCTTCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTATTATTTGTTGATCTTTAATGCGAAAACCNACCAAAACNCCTGNNNTCTGACAAATCGACCACCTGATTTTCATCTACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCACCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATT]

[+] EMBL CD116262             [ATGAATAGTAATATCATCATTAGTGCTGTTGGATGAGAAAGTGAATCTATGGGAGAATTCGCCAAATTTACTTTTCTCTTCATTCAATTCGAGGGATTCACGGGGGATTTATTGCCACACCAATCCAAACTGTTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCTTCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTATTATTTGTTGATCTTTAATGCGAAAACCNACCAAAACNCCTGNNNTCTGACAAATCGACCACCTGATTTTCATCTACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCACCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATT]




>consensus_7799#1
ATGAATAGTAATATCATCATTAGTGCTGTTGGATGAGAAAGTGAATCTATGGGAGAATTC
GCCAAATTTACTTTTCTCTTCATTCAATTCGAGGGATTCACGGGGGATTTATTGCCACAC
CAATCCAAACTGTTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTA
TTTCGATCTTCTTCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTATTA
TTTGTTGATCTTTAATGCGAAAACCNACCAAAACNCCTGNNNTCTGACAAATCGACCACC
TGATTTTCATCTACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATT
GTTGGACCTCCACCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7799#0      GTTCAGTTGACAGTTAGAGTCTGTGATAATAGAACAACAACCATTGAGCATGTTCAATGT 60
consensus_7799#1      ------------------------------------------------------------
                                                                                  

consensus_7799#0      TTTGCTAGATGATGGATAACAATCACCATTTAATTGTGAACATTCAGTGGATTGAGTTAA 120
consensus_7799#1      ------------------------------------------------------------
                                                                                  

consensus_7799#0      TTTATTTTTAATTGGATGATCATTTTGTTGAGTGTACATTTCAATATGATGAATAGTAAT 180
consensus_7799#1      ------------------------------------------------ATGAATAGTAAT 12
                                                                      ************

consensus_7799#0      ATCATCATTAGTGCTGTTGGATGA--AAGTGAATCTATGGGAGAATTTGTCAAATTTACT 238
consensus_7799#1      ATCATCATTAGTGCTGTTGGATGAGAAAGTGAATCTATGGGAGAATTCGCCAAATTTACT 72
                      ************************  ********************* * **********

consensus_7799#0      TCTTCATCCATTTCATTCCAATGATTCAAATGGGATTTATTGTCAGACCAATCCAAACTG 298
consensus_7799#1      TTTCTCTTCATTCAATTCGAGGGATTCACGGGGGATTTATTGCCACACCAATCCAAACTG 132
                      * *   * ****  **** *  ******   *********** ** **************

consensus_7799#0      TTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCT 358
consensus_7799#1      TTAGAGATACCATCATTTATATGATTGTTACCATTGGTCAAATAATTATTTCGATCTTCT 192
                      ************************************************************

consensus_7799#0      TCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTAGGATTCGGTGAACTT 418
consensus_7799#1      TCATCAATTTGATCTGAATTAAGAGGTGACTGTTCATTAATAGTATTATTTGTTGATCTT 252
                      *********************************************  *** * *** ***

consensus_7799#0      TTATGTGATAGTTGTTCCGATGAACTGTGATCTGACAAATCGTCCACCTGATTTTCATCT 478
consensus_7799#1      TAATGCGAAAACCNACCAAAACNCCTGNNNTCTGACAAATCGACCACCTGATTTTCATCT 312
                      * *** ** *      *  *    ***   ************ *****************

consensus_7799#0      ACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCA 538
consensus_7799#1      ACGCTATTATTGATCGATGATGAATGAGTAGGTTGACATACAGATATTGTTGGACCTCCA 372
                      ************************************************************

consensus_7799#0      CCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATTCGTAATTCCCAAGT 598
consensus_7799#1      CCATATATATTGAACAGAAGACTCCATACTTCAGCAGAAACATATT-------------- 418
                      **********************************************              

consensus_7799#0      GGCATCGATGAAAGAGTGGGATAATTAATTAATCCACTGTTACGATAAGAATAAAGGGAT 658
consensus_7799#1      ------------------------------------------------------------
                                                                                  

consensus_7799#0      TTATTGCATGCCATAATGTCGGAATTATCAATTGGACCTGGAGCTTCCCATATTTGTCCT 718
consensus_7799#1      ------------------------------------------------------------
                                                                                  

consensus_7799#0      TTGACAAATTGAAGCCATAGATCTAACCATTTTTTACTGACAG 761
consensus_7799#1      -------------------------------------------