cluster # 7818

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Schistosoma mansoni
cluster # 7818 cluster # 7818 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7818#0 length = 541 sequences # 4

consensus_7818#1 length = 148 sequences # 1

consensusID : consensus_7818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 541
fasta sequence

                              [AAGAAATGATGACTAGATAATATTAAACATAATCAGAGTTGCTGAAACGTTTAGTCACAAGACTGGCGCGCATACAA-TTTCAAAATTGTTTCCTTCGTTTCATTTTCTTTTTATTTCTCTTTTTGGACATTGTGATCATGAAGAAAATAAACTCAGTTAGAAATTGCGTAACCGTAGTGATAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACACTAATAGTCTCATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTTGCAGCTCTAGCAATCTGATGAGCATGACGTATTAGAATAGTGATCTCAAAAAGAACTGGTCGACCACTATGACTAACAGATCCAACAATACTGGAAGAAGAGGAAGGAGATGTAACTGTTTGTATGTTGGACAAAGTGTTCTCATTTAAATCCCCTTCACCAGCCACCTGATCATATACAGGGTCATCCACGAGAACGACCGAATTTCTTCAATAAGATTTCACTTTTAACATTCACCGGT]

[-] EMBL CD149508             [AAGAAATGATGACTAGATAATATTAAACATAATCAGAGTTGCTGAAACGTTTAGTCACAAGACTGGCGCGCATACAA TTTCAAAATTGTTTCCTTCGTTTCATTTTCTTTTTATTTCTCTTTTTTGACATTGTGATCATGAAGAAAATAAACTCAGTTAGAAATTGCGTAACCGTAGTGATAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACACTAATAGTCTCATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTTGCAGCTCTAGCAATCTGATGAGCATGACGTATTA                                                                                                                                                                                                               ]
[-] EMBL CD149539             [                                                                        TACAATTTTCAAAATTGTTTCCTTCGTTTCATTTTCTTTTTATTTCTCTTTTTGGACATTGTGATCATGAAGAAAATAAACTCAGTTAGAAATTGCGTAACCGTAGTGATAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACACTAATAGTCTCATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTTGCAGCTCTAGCAATCTCATGAGCATGACGTATTAGAATAGTGATCTCAAAAA                                                                                                                                                                                             ]
[-] EMBL CD149409             [                                                                                                                    TCTCTTCTTCGACATTGTGATCATGAAGAAAATAAACTCAGTTAGAAATTGCGTATCCGTAGTGATAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACAGTAATAGTCTCATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTTGCAGCTGTAGCAATCTGATGAGCATGACGTATTA                                                                                                                                                                                                               ]
[+] EMBL CD197715             [                                                                                                                                                     AAACTCAGTTAGAAATTGCGTAACCGTAGTGATAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACACTAATAGTCTCATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTTGCAGCTCTAGCAATCTGATGAGCATGACGTATTAGAATAGTGATCTCCGGTGGAACTGGTCGACCACTATGACTAACAGATCCAACAATACTGGAAGAAGAGGAAGGAGATGTAACTGTTTGTATGTTGGACAAAGTGTTCTCATTTAAATCCCCTTCACCAGCCACCTGATCATATACAGGGTCATCCACGAGAACGACCGAATTTCTTCAATAAGATTTCACTTTTAACATTCACCGGT]




>consensus_7818#0
AAGAAATGATGACTAGATAATATTAAACATAATCAGAGTTGCTGAAACGTTTAGTCACAA
GACTGGCGCGCATACAATTTCAAAATTGTTTCCTTCGTTTCATTTTCTTTTTATTTCTCT
TTTTGGACATTGTGATCATGAAGAAAATAAACTCAGTTAGAAATTGCGTAACCGTAGTGA
TAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACACTAATAGTCT
CATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTT
GCAGCTCTAGCAATCTGATGAGCATGACGTATTAGAATAGTGATCTCAAAAAGAACTGGT
CGACCACTATGACTAACAGATCCAACAATACTGGAAGAAGAGGAAGGAGATGTAACTGTT
TGTATGTTGGACAAAGTGTTCTCATTTAAATCCCCTTCACCAGCCACCTGATCATATACA
GGGTCATCCACGAGAACGACCGAATTTCTTCAATAAGATTTCACTTTTAACATTCACCGG
T

consensusID : consensus_7818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [TGAATGTTGAAAGTGAAATCTTATTGAAGAAATTCGGACGTTCTCGTGATGACCCTGTATATGATCAGGTAAGTGGTAATTGTAGAGAAAAGTCTTGTCATCTTGTTTAATTGCAGCTACCTATTTCTATTTGTTAGTTTAAACCCAT]

[+] EMBL CD134479             [TGAATGTTGAAAGTGAAATCTTATTGAAGAAATTCGGACGTTCTCGTGATGACCCTGTATATGATCAGGTAAGTGGTAATTGTAGAGAAAAGTCTTGTCATCTTGTTTAATTGCAGCTACCTATTTCTATTTGTTAGTTTAAACCCAT]




>consensus_7818#1
TGAATGTTGAAAGTGAAATCTTATTGAAGAAATTCGGACGTTCTCGTGATGACCCTGTAT
ATGATCAGGTAAGTGGTAATTGTAGAGAAAAGTCTTGTCATCTTGTTTAATTGCAGCTAC
CTATTTCTATTTGTTAGTTTAAACCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7818#0      AAGAAATGATGACTAGATAATATTAAACATAATCAGAGTTGCTGAAACGTTTAGTCACAA 60
consensus_7818#1      ------------------------------------------------------------
                                                                                  

consensus_7818#0      GACTGGCGCGCATACAATTTCAAAATTGTTTCCTTCGTTTCATTTTCTTTTTATTTCTCT 120
consensus_7818#1      ------------------------------------------------------------
                                                                                  

consensus_7818#0      TTTTGGACATTGTGATCATGAAGAAAATAAACTCAGTTAGAAATTGCGTAACCGTAGTGA 180
consensus_7818#1      ------------TGAATGTTGAAAGTGAAATCTTATTGAAGAAATTCGGA--CGTTCTCG 46
                                  ***   *  * *    ** ** * * *  ** * ** *  ***  *  

consensus_7818#0      TAATAACAGTTAGTTATTATTATGATCATTGCTATTATGTAAGATGAACACTAATAGTCT 240
consensus_7818#1      TGATGACC-CTGTATATGATCA-GGTAAGTGGTAAT-TGTAGAGAAAAGTCTTGTCATCT 103
                      * ** **   *   *** ** * * * * ** ** * ****     **  **  *  ***

consensus_7818#0      CATTCTGACATAATGACGATTCATGGATCAGATCGTTGAAAAAGTGAAAGTAAATCTTTT 300
consensus_7818#1      TGTTTAATTGCAGCTACC-TATTTCTATTTGTTAGTTTAAACCCAT-------------- 148
                        **       *   **  *   *  **  * * *** ***                   

consensus_7818#0      GCAGCTCTAGCAATCTGATGAGCATGACGTATTAGAATAGTGATCTCAAAAAGAACTGGT 360
consensus_7818#1      ------------------------------------------------------------
                                                                                  

consensus_7818#0      CGACCACTATGACTAACAGATCCAACAATACTGGAAGAAGAGGAAGGAGATGTAACTGTT 420
consensus_7818#1      ------------------------------------------------------------
                                                                                  

consensus_7818#0      TGTATGTTGGACAAAGTGTTCTCATTTAAATCCCCTTCACCAGCCACCTGATCATATACA 480
consensus_7818#1      ------------------------------------------------------------
                                                                                  

consensus_7818#0      GGGTCATCCACGAGAACGACCGAATTTCTTCAATAAGATTTCACTTTTAACATTCACCGG 540
consensus_7818#1      ------------------------------------------------------------
                                                                                  

consensus_7818#0      T 541
consensus_7818#1      -