cluster # 7824

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Schistosoma mansoni
cluster # 7824 cluster # 7824 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7824#0 length = 734 sequences # 4

consensus_7824#1 length = 337 sequences # 1

consensusID : consensus_7824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 734
fasta sequence

                              [GTAGGAATGAAGCACATGGAAAGTTTGCCGAAAGACCCTCTATTAACTGACAGCTTGCCTGTGGAGACATATAAACAAGTACACATTCAGCAAGGAAGAGAGTTGGGTAAACTTTGGAACAACCAGCTCCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTAAATCGAAACTCAGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGTAGTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTTAAATTGTCGTCTTTAGGTGGTAAGGCATCTGTTGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAGCGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCACCTGTGGACTTGATAAGATAAGTTGTACTTTTCGAAAGTAAGGAACCTTGATAAATGATATGGCAATCGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGACGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATAAGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACTCATCGGAGTAACGC]

[-] EMBL CD147518             [GTAGGAATGAAGCACATGGAAAGTTTGCCGAAAGACCCTCTATTAACTGACAGCTTGCCTGTGGAGACATATAAACAAGTACACATTCAGCAAGGAAGAGAGTTGGGTAAACTTTGGAACAACCAGCTCCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTAAATCGAAACTCAGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGTAGTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTTAAATTGTCGTCTTTAGGTGGTAAGGCATCTGTCGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAGCGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCACCTGTGGACTTGA                                                                                                                                                                                                                                                        ]
[-] EMBL CD147931             [                             GAAAGACCCTCTATTAACTGACAGCTTGCCTGTGGAGACATATAAACAAGTACACATTCAGCAAGGAAGAGAGTTGGGTAAACTTTGGAACAACCAGCTCCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTAAATCGAAACTCGGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGTAGTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTAAAATTGTCGTCTTTAGGTGGTAAGGCATCTGTTGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAGCGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCACCTGTGGACTTGA                                                                                                                                                                                                                                                        ]
[+] EMBL CD180234             [                                                                                                                  TGGAACAACCAGCTCCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTAAATCGAAACTCAGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGAAGTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTTAAATTGTCGTCTTTAGGTGGTAAGGCATCTGTTGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAGCGAAGTATAGTGTATCTGAGCCAGCACCGAGGTTTACAATTTGACAGGCTCCACCTGTGGACTGGATAAGATAAGTTGTACTTTTCGAAAGTAAGGAACCTTGATAAATGATATGGCAATCGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGACGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATAAGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACTCATCGGAGTAACGC]
[+] EMBL CD180166             [                                                                                                                  TGGAACAACCAGCTGCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTAAATCGAAACTCAGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGAAGTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTTAAATTGTCGTCTTTAGGTGGTAAGGCATCTGTTGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAATGTTAGATGGCAAGTCTAATTCGAC                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_7824#0
GTAGGAATGAAGCACATGGAAAGTTTGCCGAAAGACCCTCTATTAACTGACAGCTTGCCT
GTGGAGACATATAAACAAGTACACATTCAGCAAGGAAGAGAGTTGGGTAAACTTTGGAAC
AACCAGCTCCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTA
AATCGAAACTCAGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGTA
GTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTTAAATTGTCGTCTTTAGGTG
GTAAGGCATCTGTTGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAA
TGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAG
CGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCACCTGTGG
ACTTGATAAGATAAGTTGTACTTTTCGAAAGTAAGGAACCTTGATAAATGATATGGCAAT
CGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGA
CGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATA
AGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACT
CATCGGAGTAACGC

consensusID : consensus_7824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [CTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAGCGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCGCCTGTGGACTTGATAAATGATATGGCAATCGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGACGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATAAGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACTCATCGGAGTA]

[+] EMBL CD120778             [CTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAGCGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCGCCTGTGGACTTGATAAATGATATGGCAATCGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGACGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATAAGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACTCATCGGAGTA]




>consensus_7824#1
CTGAATGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTT
TAGAGCGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCGCC
TGTGGACTTGATAAATGATATGGCAATCGCTCTGAATGCAGTTGTTCTTATGAAATAGCC
ACGATTAATCTCCGGAGTTTTGTGTGACGGAGAAGAACAGAAATACTTTATATACTTGTC
TTTCCAGTATCCCCGAGAAACGGCATAAGCTTTACTGGATGTAGCGTCGTCATTAGTTAG
TTGTATGATCTCATCTGTAGGACTACTCATCGGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7824#0      GTAGGAATGAAGCACATGGAAAGTTTGCCGAAAGACCCTCTATTAACTGACAGCTTGCCT 60
consensus_7824#1      ------------------------------------------------------------
                                                                                  

consensus_7824#0      GTGGAGACATATAAACAAGTACACATTCAGCAAGGAAGAGAGTTGGGTAAACTTTGGAAC 120
consensus_7824#1      ------------------------------------------------------------
                                                                                  

consensus_7824#0      AACCAGCTCCGTTAACTGTTGAACATAAAACATCTAGAAGATCTTGAACAGGTCTTCGTA 180
consensus_7824#1      ------------------------------------------------------------
                                                                                  

consensus_7824#0      AATCGAAACTCAGTAGGTGAAACCGTCCCGTTTCGAAAACGTAGTGCAAATTATCATGTA 240
consensus_7824#1      ------------------------------------------------------------
                                                                                  

consensus_7824#0      GTGTGTTGACAACAGAAGTCTTTTGATTTATTATAGGGTTTAAATTGTCGTCTTTAGGTG 300
consensus_7824#1      ------------------------------------------------------------
                                                                                  

consensus_7824#0      GTAAGGCATCTGTTGCTTCAAGCAGTTTTCGTCGTTGTATTGTCATAGCTTTTTGCTGAA 360
consensus_7824#1      -------------------------------------------------------CTGAA 5
                                                                             *****

consensus_7824#0      TGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAG 420
consensus_7824#1      TGTTAGATGGCAAGTCTAATTCGACGTATAGTTCTGGGGTTTCCTGAGCATCTTTTAGAG 65
                      ************************************************************

consensus_7824#0      CGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCACCTGTGG 480
consensus_7824#1      CGAAGTATAGTGTATCTGAGCCTGCACCGAGGTTTACAATTTGACAGGCTCCGCCTGTGG 125
                      **************************************************** *******

consensus_7824#0      ACTTGATAAGATAAGTTGTACTTTTCGAAAGTAAGGAACCTTGATAAATGATATGGCAAT 540
consensus_7824#1      ACTTGATAA--------------------------------------ATGATATGGCAAT 147
                      *********                                      *************

consensus_7824#0      CGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGA 600
consensus_7824#1      CGCTCTGAATGCAGTTGTTCTTATGAAATAGCCACGATTAATCTCCGGAGTTTTGTGTGA 207
                      ************************************************************

consensus_7824#0      CGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATA 660
consensus_7824#1      CGGAGAAGAACAGAAATACTTTATATACTTGTCTTTCCAGTATCCCCGAGAAACGGCATA 267
                      ************************************************************

consensus_7824#0      AGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACT 720
consensus_7824#1      AGCTTTACTGGATGTAGCGTCGTCATTAGTTAGTTGTATGATCTCATCTGTAGGACTACT 327
                      ************************************************************

consensus_7824#0      CATCGGAGTAACGC 734
consensus_7824#1      CATCGGAGTA---- 337
                      **********