cluster # 7831

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Schistosoma mansoni
cluster # 7831 cluster # 7831 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7831#0 length = 572 sequences # 1

consensus_7831#1 length = 560 sequences # 4

consensusID : consensus_7831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAATTCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAATTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGNCAGATATCGACATCCTTCATGGCCAAGA]

[+] EMBL CD160964             [TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAATTCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAATTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGNCAGATATCGACATCCTTCATGGCCAAGA]




>consensus_7831#0
TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAAT
TCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAA
TTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGA
GTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATA
CAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCT
TCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACGT
CTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATAT
CACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCG
AAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCT
CTGNCAGATATCGACATCCTTCATGGCCAAGA

consensusID : consensus_7831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 560
fasta sequence

                              [TTAAATTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGCAAATCAGTTATACCA]

[-] EMBL AI975447             [TTAAATTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGCAAATCAGTTATACCA]
[-] EMBL AI975453             [                             TCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGCAAATCAGTTATACCA]
[-] EMBL AI975448             [                                                                                                                           TACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAGAGCACGTGCAATTGCTTCGCCACCACGTGGAGTAAGTGAATTATCTGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCGTTTTGATAAAGGTAAAGCTCTTCTAAGGA                                                                                                                                                                                                                                     ]
[-] EMBL CD115647             [                                                                                                                                                                                                           AGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTNTATCCCATGAATTCCAATCCCATTTTGCACCCGCCAAAGATTTTTTAAGGACCCCATATAACAGAAAACCTTAGAAAGCATTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAG                                                                                                                                                 ]




>consensus_7831#1
TTAAATTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAAT
TAGGAGTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGA
GTATACAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAA
TTGCTTCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCG
GACTAGATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCC
CATTTTGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCA
TTTGAGCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTC
CTTGATTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTT
CATGGCCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCG
CCAGCAAATCAGTTATACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7831#0      TGCAAAAGTCCGACTGAATCAAGTGTTTGAATTATTGATCGAACACCGGAGCGACCGAAT 60
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      TCATTAGCATTCAAGTCTAGTAATTCTAAATGGGATTTATTGCCCAGCGATAGAATTAAA 120
consensus_7831#1      -------------------------------------------------------TTAAA 5
                                                                             *****

consensus_7831#0      TTAATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGA 180
consensus_7831#1      TTTATTCCAGCAGACAGTTTGATTTCGTTTCCGGTTAGATTTAAAACTCTTAAATTAGGA 65
                      ** *********************************************************

consensus_7831#0      GTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATA 240
consensus_7831#1      GTGGTGTCGGGATCTTCAAAAGCGGAAGCAAGTGCCTTTACACCAGTTGATCGGAGTATA 125
                      ************************************************************

consensus_7831#0      CAATCACTCAAGTAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCT 300
consensus_7831#1      CAATCACTCAAATAAAGTTCCTCTAGATTGACTACTGAAGGTAAGGCACGTGCAATTGCT 185
                      *********** ************************************************

consensus_7831#0      TCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGAC-- 358
consensus_7831#1      TCGCCACCACGTGGAGTAAGTGAATTATCCGACAAATTTAACACTCGTAAATTCGGACTA 245
                      **********************************************************  

consensus_7831#0      --------------------------------GTCTATCCCATGAATTCCAATCCCATTT 386
consensus_7831#1      GATTTAATTATTTTCACCAGTGACAAAATACCGTCTATCCCATGAATTCCAATCCCATTT 305
                                                      ****************************

consensus_7831#0      TGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGA 446
consensus_7831#1      TGATAAAGGGAAAGCTCTTCTAAGGACCCCATATCACAGAAAACCTTAGAAAGCATTTGA 365
                      ************************************************************

consensus_7831#0      GCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGA 506
consensus_7831#1      GCTCCAACATTTTCTAAACGATTTCTTCCTCCCGAAAATATTTTTAGGAGTAGTCCTTGA 425
                      ************************************************************

consensus_7831#0      TTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGNCAGATATCGACATCCTTCATGG 566
consensus_7831#1      TTCTTTGACAAACATCTTCCTTCTTCTAAGGCCTCTGCAAGATATCGACATCCTTCATGG 485
                      *************************************  *********************

consensus_7831#0      CCAAGA------------------------------------------------------ 572
consensus_7831#1      CCAAGACCTTGGTTGTTCATTCGCAGTATCTCAAGAGTGTGACAAGTATTGCTCGCCAGC 545
                      ******                                                      

consensus_7831#0      ---------------
consensus_7831#1      AAATCAGTTATACCA 560