cluster # 7843

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Schistosoma mansoni
cluster # 7843 cluster # 7843 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7843#0 length = 578 sequences # 1

consensus_7843#1 length = 559 sequences # 4

consensusID : consensus_7843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [TCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGATATAGTACTAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCAGTCTTATTCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTCAAATCATTACATTCATTGGGAGAATCATCTGAATCGGATGTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGATATAGGGCTAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCAGTCTTATTCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTCAAATCATTACATTCATTGGGAGAATCATCTGAATCGGA]

[+] EMBL CD167835             [TCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGATATAGTACTAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCAGTCTTATTCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTCAAATCATTACATTCATTGGGAGAATCATCTGAATCGGATGTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGATATAGGGCTAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCAGTCTTATTCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTCAAATCATTACATTCATTGGGAGAATCATCTGAATCGGA]




>consensus_7843#0
TCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGATATAGTA
CTAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCAGTCTTA
TTCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTCAAATCA
TTACATTCATTGGGAGAATCATCTGAATCGGATGTATTGTTGCTAGAACAGTCGAACATT
TGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATA
TTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATA
AGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGAT
ATAGGGCTAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCA
GTCTTATTCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTC
AAATCATTACATTCATTGGGAGAATCATCTGAATCGGA

consensusID : consensus_7843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 559
fasta sequence

                              [CAATCTGGAAAACATGACAATGTGTTCATTAATGCAGAAGACAATGGTTTCTTCTTAATTTTCTCTAAAGCATTCGTATCATTTGATATGTTTTGATCGATGGAGGGATTATGCACTGCTCTA-TGTAAAAGAGTAGAATTTTTATGTAGTGTAGAAGGAAAATAGGATACAGCTGAAGTTGGACTGATTGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCTTAATGCGAGTAAATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATGATCCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCGTTAACTCTTGATATAGTACTAGTAATATCTTGACCTTCCA]

[+] EMBL CD116962             [CAATCTGGAAAACATGACAATGTGTTCATTAATGCAGAAGACAATGGTTTCTTCTTAATTTTCTCTAAAGCATTCGTATCATTTGATATGTTTTGATCGATGGAGGGATTATGCACTGCTCTA TGTAAAAGAGTAGAATTTTTATGTAGTGTAGAAGGAAAATAGGATACAGCTGAAGTTGGACTGATTGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCTTAATGCGAGTAAATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATGATCCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAA                                                                                                                                             ]
[-] EMBL CD178369             [                                                                                                                    TGCTCTA TGTAAAAGAGTAGAATTTTTATGTAGTGTAGAAGGAAAATAGGATACAGCTGAAGTTGGACTGATTGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCGTAATGCGAGTAAATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATGATCCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCGTTAACTCTTGATATAGTACTAGTAATATCTTGACCTTCCA]
[-] EMBL CD178959             [                                                                                                                    TGCTCTATTGTAAAAGAGTAGAATTTTTATGTAGTGTAGAAGGACAATAGGATACAGCTGAAGTTGGACTGA TGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCGTAATGCGAGTAAATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATGATCCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCGTTAACTCTTGATATAGTACTAGTA                ]
[-] EMBL CD094431             [                                                                                                                          A TGTAAAAGAGTAGAATTTTTATGTAGTGTAGAAGGAAAATAGGATACAGCTGAAGTTGGACTGATTGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCTTAATGCGAGTAAATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATGATCCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGGAAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTT                               ]




>consensus_7843#1
CAATCTGGAAAACATGACAATGTGTTCATTAATGCAGAAGACAATGGTTTCTTCTTAATT
TTCTCTAAAGCATTCGTATCATTTGATATGTTTTGATCGATGGAGGGATTATGCACTGCT
CTATGTAAAAGAGTAGAATTTTTATGTAGTGTAGAAGGAAAATAGGATACAGCTGAAGTT
GGACTGATTGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCTTAATGCGAGTA
AATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATGAT
CCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGGAA
GACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAAAA
TATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTTCA
GACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCGTTAACTCTTGATATAGTACTA
GTAATATCTTGACCTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7843#0      ------------------------------------------------------------
consensus_7843#1      CAATCTGGAAAACATGACAATGTGTTCATTAATGCAGAAGACAATGGTTTCTTCTTAATT 60
                                                                                  

consensus_7843#0      ---------------------TCAGACA-GTTTTGTT--ACAAATGCCTCATCTAA-ACT 35
consensus_7843#1      TTCTCTAAAGCATTCGTATCATTTGATATGTTTTGATCGATGGAGGGATTATGCACTGCT 120
                                           *  ** * ****** *  *   * *  * **  *   **

consensus_7843#0      TTCCTCA------TTAACTCTTGATATAGTACTAGTAATATCTTGAGATTTTTCGGAA-C 88
consensus_7843#1      CTATGTAAAAGAGTAGAATTTTTATGTAGTG-TAGAAGGAAAATAGGATACAGCTGAAGT 179
                       *    *      *  * * ** ** ****  *** *  *   *  ***    * ***  

consensus_7843#0      CGTTATGACCAAAAATAGAGATT-TCAGTCTTATTCGTCGATAACA--CTTGACCAGATA 145
consensus_7843#1      TGGACTGATTGGGGCTGATGTCGGTCGATTGTAAACGTCATCATTAGTCTTAATGCGA-G 238
                       *   ***       *   *    **  *  **  ****   *  *  *** *   **  

consensus_7843#0      CTGATTCTCCAAGAGGTGTTGAAAAATTCA---------AATCATTACATTCATTGGGAG 196
consensus_7843#1      TAAATTCAGGTAGAGAAATCTTAGGATTAACCGTTACAGAATAACTTTTTGAGTCGAATG 298
                         ****    ****   *   *  *** *         *** * *   *   * *   *

consensus_7843#0      AATCATCTGAATCGGATG---------TATTGTTGCTAGAACAGTCGAACATTTGACTGG 247
consensus_7843#1      ATCCACCTGGCTTCAGGGCTTTACTATTATTGTTGCTAGAACAGTCGAACATTTGACTGG 358
                      *  ** ***  *     *         *********************************

consensus_7843#0      AAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAA 307
consensus_7843#1      AAGACGGATTTCTGCTACCACAAGAAACTGACGGCGATGACTGAGAAAGTATATTTGAAA 418
                      ************************************************************

consensus_7843#0      AATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTT 367
consensus_7843#1      AATATTCAGATCGGAAGTATTTGTTTCGCCAAGCAAGCAAATCTTCAGGAATAAGTAGTT 478
                      ************************************************************

consensus_7843#0      CAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCATTAACTCTTGATATAGGGC 427
consensus_7843#1      CAGACAGTTTTGTTACAAATGCCTCATCTAAACTTTCCTCGTTAACTCTTGATATAGTAC 538
                      **************************************** ****************  *

consensus_7843#0      TAGTAATATCTTGAGATTTTTCGGAACCGTTATGACCAAAAATAGAGATTTCAGTCTTAT 487
consensus_7843#1      TAGTAATATCTTGACCTTCCA--------------------------------------- 559
                      **************  **                                          

consensus_7843#0      TCGTCGATAACACTTGACCAGATACTGATTCTCCAAGAGGTGTTGAAAAATTCAAATCAT 547
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      TACATTCATTGGGAGAATCATCTGAATCGGA 578
consensus_7843#1      -------------------------------