cluster # 7844

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Schistosoma mansoni
cluster # 7844 cluster # 7844 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7844#0 length = 634 sequences # 3

consensus_7844#1 length = 205 sequences # 2

consensusID : consensus_7844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 634
fasta sequence

                              [CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTCGCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTTGATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGAGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTCCAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCAAGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCATACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGCTCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATATCCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGTGGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCACGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA]

[+] EMBL CD180883             [CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTCGCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTTGATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGAGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTCCAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCAAGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCATAC                                                                                                                                                                                                                                                                                ]
[-] EMBL CD144206             [                                                                                                                                                                              AATCACGGAACAAGACAAAGCCA TTTAGGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTCCAATAAGCTAGATAACCAAATAGAAAATGAAAAAGTTCTTGCCAAGGAACTTATTAGGCAAGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCATACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGCTCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATATCCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAA                                                                                                            ]
[+] EMBL CD157922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAATAAGGCTCTTCAGGATATCCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGTGGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCACGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA]




>consensus_7844#0
CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTC
GCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTT
GATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGA
GGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTC
CAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCA
AGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCAT
ACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGC
TCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATAT
CCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGT
GGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCA
CGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA

consensusID : consensus_7844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 205
fasta sequence

                              [CTTCCGGACGGCGTGTGTAGATTTCAATGTCACCACCAAATCACCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCA]

[-] EMBL CD187558             [CTTCCGGACGGCGTGTGTAGATTTCAATGTCACCACCAAATCACCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTC     ]
[-] EMBL CD128694             [                                           CCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACGAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTG CAAACTCAGTCA]




>consensus_7844#1
CTTCCGGACGGCGTGTGTAGATTTCAATGTCACCACCAAATCACCGGATACAACAATAAA
GAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCT
TTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACAAGACAAAGCCATTTTAAGGTTGA
AGAGGCAACGTGACAAACTCAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7844#0      CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTC 60
consensus_7844#1      -----------------------------CTTCCGGACGGCGTGTGTAGATTTCAATGTC 31
                                                     * ********* *** * *** *******

consensus_7844#0      GCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTT 120
consensus_7844#1      ACCACCAAATCACCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTT 91
                       ****** ******* **** ****************** ***** ******** *****

consensus_7844#0      GATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGA 180
consensus_7844#1      GAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCAC 151
                      ** ***** *************************************************  

consensus_7844#0      GGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTC 240
consensus_7844#1      GGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCA------ 205
                      ******************************************************      

consensus_7844#0      CAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCA 300
consensus_7844#1      ------------------------------------------------------------
                                                                                  

consensus_7844#0      AGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCAT 360
consensus_7844#1      ------------------------------------------------------------
                                                                                  

consensus_7844#0      ACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGC 420
consensus_7844#1      ------------------------------------------------------------
                                                                                  

consensus_7844#0      TCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATAT 480
consensus_7844#1      ------------------------------------------------------------
                                                                                  

consensus_7844#0      CCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGT 540
consensus_7844#1      ------------------------------------------------------------
                                                                                  

consensus_7844#0      GGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCA 600
consensus_7844#1      ------------------------------------------------------------
                                                                                  

consensus_7844#0      CGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA 634
consensus_7844#1      ----------------------------------