These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 634 fasta sequence [CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTCGCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTTGATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGAGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTCCAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCAAGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCATACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGCTCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATATCCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGTGGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCACGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA] [+] EMBL CD180883 [CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTCGCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTTGATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGAGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTCCAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCAAGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCATAC ] [-] EMBL CD144206 [ AATCACGGAACAAGACAAAGCCA TTTAGGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTCCAATAAGCTAGATAACCAAATAGAAAATGAAAAAGTTCTTGCCAAGGAACTTATTAGGCAAGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCATACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGCTCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATATCCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAA ] [+] EMBL CD157922 [ GAATAAGGCTCTTCAGGATATCCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGTGGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCACGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA] consensusID : consensus_7844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 205 fasta sequence [CTTCCGGACGGCGTGTGTAGATTTCAATGTCACCACCAAATCACCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCA] [-] EMBL CD187558 [CTTCCGGACGGCGTGTGTAGATTTCAATGTCACCACCAAATCACCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTC ] [-] EMBL CD128694 [ CCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTTGAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCACGGAACGAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTG CAAACTCAGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7844#0 CCTTCAATTTGCCGCTACTACCTAAACTTGCTTCGGACGGCGAGTGAATATTCCAATGTC 60 consensus_7844#1 -----------------------------CTTCCGGACGGCGTGTGTAGATTTCAATGTC 31 * ********* *** * *** ******* consensus_7844#0 GCCACCATATCACCGTATACTACAATAAAGAGCTTATCATGTGCCTATTTATCATGGCTT 120 consensus_7844#1 ACCACCAAATCACCGGATACAACAATAAAGAGCTTATCAAGTGCCAATTTATCAAGGCTT 91 ****** ******* **** ****************** ***** ******** ***** consensus_7844#0 GATAGGTGGCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCGA 180 consensus_7844#1 GAAAGGTGTCAGCTAAATGGGTTCACTCTTTTCAAGACGCAAAAATCGGTCCAGAATCAC 151 ** ***** ************************************************* consensus_7844#0 GGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCAGATGTC 240 consensus_7844#1 GGAACAAGACAAAGCCATTTTAAGGTTGAAGAGGCAACGTGACAAACTCAGTCA------ 205 ****************************************************** consensus_7844#0 CAATAACCTATATAACCAAATAAAAAATGAGAAAGTTCTTGCCAAGGAACTTATTAGGCA 300 consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 AGGTAAAAAGGAGCGGGCTCTGCTGCTGCTGAAAAAGAAGAGGTATCTTGAAAACCTCAT 360 consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 ACATAAAACTGGTATTCAACTATCGAACATCGAACAACTTGTCAATGACATCGAATTTGC 420 consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 TCAAATAGAAGTGGATGTTTTAGATGGGTTAAAGTGCGGGAATAAGGCTCTTCAGGATAT 480 consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 CCAAAAGGTAATGTCGTTAGATGATGCCGAACGGATTATGTCAGAAGCTCATGATGCTGT 540 consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 GGAATATCAACGTGAGTTAGATGATATCGTTTCTGGCGGTCTGTCCTCTAATGATTACCA 600 consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 CGAGATTGAGTGTGAATTAACTCGTCTCGTAGAA 634 consensus_7844#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||