cluster # 7849

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7849 cluster # 7849 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7849#0 length = 621 sequences # 4

consensus_7849#1 length = 547 sequences # 1

consensusID : consensus_7849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 621
fasta sequence

                              [TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGTATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCC-TTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAATAT]

[-] EMBL CD161024             [TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGTATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCC TTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTCCTTGGTCGCCTGCTATATTTTC                                                                                                                                                                                                                                                 ]
[+] EMBL CD078294             [                                                                      TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAA   ]
[+] EMBL AI977180             [                                                                                                                                                                                                                                                                                                           TTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAATAT]
[-] EMBL CD072942             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tgAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATAAAACAATA ]




>consensus_7849#0
TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGT
ATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGA
TTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAG
CTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTA
ACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTCTCATGGCGTT
GTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCT
TGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGG
CGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTCA
ACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGA
TTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCAT
GCATTTAGAATAAAACAATAT

consensusID : consensus_7849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCCCTTTNGGNGTTAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATANAACAA]

[+] EMBL CD078381             [TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTCCATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCCCTTTNGGNGTTAACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAACAACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAATANAACAA]




>consensus_7849#1
TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGATTCTAGTGGG
TGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAGCTCGCAAAGA
GCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTAACTGCATCCA
AAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGTTGTTTGTGGG
TGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTCTTGGTCGCCT
TCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAGGCGCTGTTTC
CATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCCCTTTNGGNGTTAACACTTGATGG
CCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGGATTACATGTAAC
AACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCATGCATTTAGAAT
ANAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7849#0      TATTGAAACTGCGAACATCTGGTGGCGCGTAGTTACTCGTGAGAATGTCGTTGTCAAAGT 60
consensus_7849#1      ------------------------------------------------------------
                                                                                  

consensus_7849#0      ATATTTCCCCTTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGA 120
consensus_7849#1      ----------TTCGTTGACCTCCCTACCACTATGCTTACCCCGTTATTATGGAGGTGTGA 50
                                **************************************************

consensus_7849#0      TTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAG 180
consensus_7849#1      TTCTAGTGGGTGTAAGCGCATTCGGGTTAAATCTTTACTTCGCCCGCCGAGTAATGCAAG 110
                      ************************************************************

consensus_7849#0      CTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTA 240
consensus_7849#1      CTCGCAAAGAGCACAATGTTGAGTTGCCTATAATGTATCACCCTACAGACAAATTATTTA 170
                      ************************************************************

consensus_7849#0      ACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTT-CTCATGGCGT 299
consensus_7849#1      ACTGCATCCAAAGGGGTCATCAAAATTATCTAGAAGTTCTCCCTTTTTTTCTCATGGCGT 230
                      ************************************************* **********

consensus_7849#0      TGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTC 359
consensus_7849#1      TGTTTGTGGGTGGTTTGCGTTACCCGCGGATGTATACTGCATGTGGTGCGGTATTTCTTC 290
                      ************************************************************

consensus_7849#0      TTGGTCGCCTGCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAG 419
consensus_7849#1      TTGGTCGCCTTCTATATTTTCAGGGGTATGCAACCGGAGACCCAGCAAAGCGTTATAAAG 350
                      ********** *************************************************

consensus_7849#0      GCGCTGTTTCCATGGCCGGCGGATTCCCAATGATTATGGGGTTGCTAGTTTTCGGTGTTC 479
consensus_7849#1      GCGCTGTTTCCATGGCCGGCGGGNGCCCCCCCCCCCCCCCCCCCCCC-CTTTNGGNGTT- 408
                      **********************   ***                *    *** ** *** 

consensus_7849#0      AACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGG 539
consensus_7849#1      AACACTTGATGGCCAGTATAAGGTGTACGGGTTGTGCATTGCGTAGTTGAAGGAAGTTGG 468
                      ************************************************************

consensus_7849#0      ATTACATGTAACAACATTCATAAATATTTAGTAGACAGCTATTTTTATCATTGTCATGCA 599
consensus_7849#1      ATTACATGTAACAACATTNGGGGGCATTTACTAGACAGCTATTTTTATCATTGTCATGCA 528
                      ******************       ***** *****************************

consensus_7849#0      TGCATTTAGAATAAAACAATAT 621
consensus_7849#1      TGCATTTAGAATANAACAA--- 547
                      ************* *****