cluster # 7851

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Schistosoma mansoni
cluster # 7851 cluster # 7851 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7851#0 length = 453 sequences # 4

consensus_7851#1 length = 227 sequences # 1

consensusID : consensus_7851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 453
fasta sequence

                              [ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGTAAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGAGACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCATATTGGTGATGAAACTGAAGA]

[+] EMBL CD118999             [ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGTAAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGAGACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCATATTGGTGATGAAACTGAAGA]
[+] EMBL CD119066             [ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGTAAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGAGACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAG                                                                                                                                        ]
[-] EMBL CD118109             [                                                                                                                                             TTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGCTATTCTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAA                                                                                                                                   ]
[+] EMBL CD117191             [                                                                                                                                                                       ATTCTCCAAGGTTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTA                                                          ]




>consensus_7851#0
ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGT
AAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGA
GACAAATGATTCGAATTCTGTTTGCATTACTAGACCATCGAGATGTGATTCTCCAAGGTT
GAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAGGG
TTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTTTT
GGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTTAT
GTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGA
AGTTTTTCATCATATTGGTGATGAAACTGAAGA

consensusID : consensus_7851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [CCGGAATGCCGACCTTTCAGAAGTTATGTCAAAAAGTTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCGTATTGGTGATGAAACTGAAGAAGTTGATCCTTCTACTATACCAGATGAAATGCTATCCCCATTCCGAGTAAATACACCTGCTGGGTTTACTCTCTCACCTGATTTTACTAATTTGAAATCTGATCCCAA]

[+] EMBL CD126999             [CCGGAATGCCGACCTTTCAGAAGTTATGTCAAAAAGTTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCGTATTGGTGATGAAACTGAAGAAGTTGATCCTTCTACTATACCAGATGAAATGCTATCCCCATTCCGAGTAAATACACCTGCTGGGTTTACTCTCTCACCTGATTTTACTAATTTGAAATCTGATCCCAA]




>consensus_7851#1
CCGGAATGCCGACCTTTCAGAAGTTATGTCAAAAAGTTTGATTTAGGAAGTACTCATGTT
ATAAAAGAATTTCAACCAACCATCGAAGTTTTTCATCGTATTGGTGATGAAACTGAAGAA
GTTGATCCTTCTACTATACCAGATGAAATGCTATCCCCATTCCGAGTAAATACACCTGCT
GGGTTTACTCTCTCACCTGATTTTACTAATTTGAAATCTGATCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7851#0      ACAATTTGAGTGCAGCAAAGTGGTCACTGACGCTCCTTTTCATAAAAAAGATAGCATAGT 60
consensus_7851#1      ------------------------------------------------------------
                                                                                  

consensus_7851#0      AAAATCCAACCGATCTACAGAATCCTTTGAGAAGACAGAAAAACGTCAAAGTATTCAAGA 120
consensus_7851#1      ---------CCGGAATGCCGA--CCTTTCAGAAGTTA------TGTCAAAAAGTTTGATT 43
                               ***   * * **  ***** *****  *       ******   **  *  

consensus_7851#0      GACAAATGATTCGAATTCTGTTTGCATTACTA--GACCATCGAGATGTGATTCTCCAAGG 178
consensus_7851#1      TAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATCGAAGTTT--TTCATCGTAT 101
                       *  **  * **   ** *    * *** * *   ********  * *  ***  *    

consensus_7851#0      TTGAGTCAAACAATGATTCCATTATCGAAACAGCCTTCATGTACATCAAGTTATTCTGAG 238
consensus_7851#1      TGGTGATGAA-ACTGAAGAAGTTG-------ATCCTTCTACTATACCAGATGA-----AA 148
                      * * *   ** * ***     **        * *****   ** * **  * *     * 

consensus_7851#0      GGTTATACTGTATCTACTGAACGACGTATGGTTGATGAACTTTCACAACGATATATGCTT 298
consensus_7851#1      TGCTATCCCCATTCCGAGTAAATACACCTGCTGGGTTTACTCTCTCACCTGATTTTACTA 208
                       * *** *    **     **  **   ** * * *  *** ** ** *    * * ** 

consensus_7851#0      TTGGATAAAGTAAACCTAGATGAACTAAGTTCTGGTGGACAGACTGCATTCCAAGATGTT 358
consensus_7851#1      ATTTGAAATCTGATCCCAA----------------------------------------- 227
                       *    **  * * ** *                                          

consensus_7851#0      ATGTCAAAAAGTGTTGATTTAGGAAGTACTCATGTTATAAAAGAATTTCAACCAACCATC 418
consensus_7851#1      ------------------------------------------------------------
                                                                                  

consensus_7851#0      GAAGTTTTTCATCATATTGGTGATGAAACTGAAGA 453
consensus_7851#1      -----------------------------------