cluster # 7858

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7858 cluster # 7858 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7858#0 length = 260 sequences # 2

consensus_7858#1 length = 252 sequences # 1
consensus_7858#2 length = 221 sequences # 2

consensusID : consensus_7858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 260
fasta sequence

                              [AGTAACACTGAACACCACCACCCCCACCATTATTCCAACCACAATCAACACCGCACCCACAAACACAACTCCTAACACAGATACAACCACAACTACAACAACCTCCATCACCACAGCGTCACAATCAACACCAATCTCCTCCAGCACAACTCCAACGATCACCAACCTCACAACTCCTACTGGTCAAACTCCCTCGACAGAGACTACATTCACCACAACAACCATCAACAATCCCAACCTAACCACCATTACACTATCCA]

[+] EMBL CD085650             [AGTAACACTGAACACCACCACCCCCACCATTATTCCAACCACAATCAACACCGCACCCACAAACACAACTCCTAACACAGATACAACCACAACTACAACAACCTCCATCACCACAGCGTCACAATCAACACCAATCTCCTCCAGCACAACTCCAACGATCACCAACCTCACAACTCCTACTGGTCAAACTCCCTCGACAGAGACTACATTCACCACAACAACCATCAACAATCCCAACCTAACCACCATTACACTATCCA]
[+] EMBL CD085618             [AGTAACACTGAACACCACCACCCCCACCATTATTCCAACCACAATCAACACCGCACCCACAAACACAACCCCTAACACAGATACAACCACAACTACAACAACCTCCATCACCACAGCGTCACAATCAACACCAATCTCCTCCAGCACAACTCCAACGATCACCAACCTCACAACTCCTACTGGTCAAACTCCCTCGACAGAGACTACATTCACCACAACAACCATCAACAATCCCAACCTAACCACCATTACACTATCCA]




>consensus_7858#0
AGTAACACTGAACACCACCACCCCCACCATTATTCCAACCACAATCAACACCGCACCCAC
AAACACAACTCCTAACACAGATACAACCACAACTACAACAACCTCCATCACCACAGCGTC
ACAATCAACACCAATCTCCTCCAGCACAACTCCAACGATCACCAACCTCACAACTCCTAC
TGGTCAAACTCCCTCGACAGAGACTACATTCACCACAACAACCATCAACAATCCCAACCT
AACCACCATTACACTATCCA

consensusID : consensus_7858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [TGGGTGGTGTCCATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGTGAATCGGAAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCGTTGGACGTTGATACTGTCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGTAGTTTGTGAGAGATTGAATGTTGTTGATTGTGGTTGGAATAATGGTGGGGGTGGTGGTGTTCAGTGTTACTGGTGCGGT]

[+] EMBL CD134138             [TGGGTGGTGTCCATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGTGAATCGGAAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCGTTGGACGTTGATACTGTCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGTAGTTTGTGAGAGATTGAATGTTGTTGATTGTGGTTGGAATAATGGTGGGGGTGGTGGTGTTCAGTGTTACTGGTGCGGT]




>consensus_7858#1
TGGGTGGTGTCCATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGT
GAATCGGAAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCG
TTGGACGTTGATACTGTCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGTAGTTTGT
GAGAGATTGAATGTTGTTGATTGTGGTTGGAATAATGGTGGGGGTGGTGGTGTTCAGTGT
TACTGGTGCGGT

consensusID : consensus_7858#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 221
fasta sequence

                              [TGTCAATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGTGAATCGGAAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCGTTGGACGTTGATACTGTCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGTAGTTTGTGAGAGATTGAATGTTGTTGATGGTGTGACAGATGTTTGTGATTGTGTA]

[+] EMBL CD180248             [TGTCAATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGTGAATCGGAAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCGTTGGACGTTGATACTGTCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGTAGTTTGTGAGAGATTGAATGTTGTTGATGGTGTGACAGATGTTTGTGATTGTGTA]
[+] EMBL CD180156             [cGTCAATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAAATCCCGCGAATTGTGAATCGGAAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCGTTGGACGTTGATACTGTCAGTGGTAGTGAAGTATTTGCAGTTGGAGTGTGAGTAGTTTGTGAGAGATTGAATGTTGTTGATGGTGTGACACATGTTTGTGATTGTGTA]




>consensus_7858#2
TGTCAATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGTGAATCGG
AAGCACTGGTTGTGGCTACAGAGGACAGTGTTGGTGGTGGTGTGAATGTTGCGTTGGACG
TTGATACTGTCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGTAGTTTGTGAGAGAT
TGAATGTTGTTGATGGTGTGACAGATGTTTGTGATTGTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7858#1      TGGGTGGTGTCCATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGT 60
consensus_7858#2      -------TGTCAATGGTGTGAGAGGATGTTGGTGTTTGTGATGTAGATCCGGTGAATTGT 53
consensus_7858#0      --------AGTAACACTGAACACCACCACCCCCACCATTATTCCAACCACAATCAACACC 52
                                  *   **                    *  *  *    *  * **    

consensus_7858#1      GAATCGG-AAGCACTGGTTGTGGC-TACAGAGGACAGTGTTGGTGGTGGTGTGAAT---- 114
consensus_7858#2      GAATCGG-AAGCACTGGTTGTGGC-TACAGAGGACAGTGTTGGTGGTGGTGTGAAT---- 107
consensus_7858#0      GCACCCACAAACACAACTCCTAACACAGATACAACCACAACTACAACAACCTCCATCACC 112
                      * * *   ** ***   *  *  *  * * *  **                *  **    

consensus_7858#1      GTTGCGTTGGACGTTGATACTG-TCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGT 173
consensus_7858#2      GTTGCGTTGGACGTTGATACTG-TCAGTGGTAGTGAAGTAGTTGCAGTTGGAGTGTGAGT 166
consensus_7858#0      ACAGCGTCACA-ATCAACACCAATCTCCTCCAGCACAACTCCAACGATCACCAACCTCAC 171
                         ****   *  *  * **   **      **   *       *  *            

consensus_7858#1      AGTTTGTGAGAGATTGAATGTTGTTGATTGTGGTTGGA---ATAATGGTGGGGGTGGTGG 230
consensus_7858#2      AGTTTGTGAGAGATTGAATGTTGTTGATGGTGTGACAG---ATGTTTGTGATTGTGTA-- 221
consensus_7858#0      AACTCCT-ACTGGTCAAACTCCCTCGACAGAGACTACATTCACCACAACAACCATCAACA 230
                      *  *  * *  * *  **     * **  * *         *            *     

consensus_7858#1      TGTTCAGTGTTACTGGTGCGGT-------- 252
consensus_7858#2      ------------------------------
consensus_7858#0      ATCCCAACCTAACCACCATTACACTATCCA 260