These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1069 fasta sequence [CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACGAACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATATGGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCTATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTGAATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAATTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAAAATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTGGACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGAAAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTGAGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTT-GAAGTTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCT-ACGGGCAAAGGAATTATGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTATGACTTCTGCTGGACCAGGAAGTCTCCCAGGATCCAACCGAATTCGTTTTAAAATGGTGCCAAGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA] [+] EMBL CD082674 [CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACGAACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATATGGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCTATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTGAATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAATTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAAAATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTGGACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGAAAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTGAGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTT GAAGTTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCT ACGGGC ] [+] EMBL SMAA17941 [ ACAAAAATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTGGACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGAAAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTGAGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTTGGAAGTTGCAGTAGACTATCTTCcacg ] [-] EMBL CD146271 [ AATGTTGCATGCAATCAATGGTAACCTT GAAGTTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTG ] [-] EMBL AI394877 [ GGCCCACCCATCAAGCTGTGGGTCTACTTCTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCTAACGGGCAAAGGAATTATGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTATGACTTCTGCTGGACCAGGAAGTCTCCCAGGATCCAACCGAATTCGTTTTAAAATGGTGCCAAGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA] consensusID : consensus_7862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CTCCTAGCCAAAGCCCAAACAATTTAAGTTGGAANGTGAGGAACAGGGACCTTAGTGAGAGACAATCTCTACGGGCCCTTGGGGCAACCCTAAAATGTGGGGCTACCTCCAAGANGTGGCCTCCAGATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAATTAATGCTCCGAACCGCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTATGACTTCTGCGGACCAGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGCCAAGTAAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGTAACGCGCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGA] [-] EMBL SMAA69902 [CTCCTAGCCAAAGCCCAAACAATTTAAGTTGGAANGTGAGGAACAGGGACCTTAGTGAGAGACAATCTCTACGGGCCCTTGGGGCAACCCTAAAATGTGGGGCTACCTCCAAGANGTGGCCTCCAGATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAATTAATGCTCCGAACCGCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTATGACTTCTGCGGACCAGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGCCAAGTAAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAAAATCTGTAACGCGCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATCTTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATTCTTTTGTAACTAGATGTGAAATAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7862#0 CCGAGCCAAGATTCGGCACGAGGTCGGTGGGCTGTTACTATCTGTGCATTAAAAAGAACG 60 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AACTTGCAAGACGACATCTTGTAAAAGCTTCACAGCTAGACAGAAGATATGGTCCTATAT 120 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GGCTTACACTTGGGCATGCATTTGCTGCTGATGGTGAACATGATCAAGCTATTGCTTCCT 180 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 ATTGTACAGCTGCTCAAGTTATTCGAGGTTCGCATATTCCTATAATGTATATTGGTATTG 240 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AATACAGTGCTAGCAATAATCGCAATCTAGCTGAACGATTTCTTAATCAAGCCTATTTAA 300 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 TTAGTCCAAGTGATCCTTTTGTTTTACATGAATTAGGCACATTGGCCTTTGAATCACAAA 360 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AATATGTAGACGCTACAAGGTTCTTGGTTCGTGCTTATGAAAGGGCTTGTGAATTAAGTG 420 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GACAAGTTCCTTCGCCTTTCTGGGAGCCCCTTGTTAATAATTTAGCACATTCTTATAGGA 480 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AAATGGGACTTTACAGTCAGGCAATAGCTATGCATGAACTTGCACTTCGCTTAGTGCCTG 540 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AGTCTCCAACAACATTTGCATGTTTGGCAATGTTGCATGCAATCAATGGTAACCTTGAAG 600 consensus_7862#1 -CTCCTAGCCAAAGCCCAAACAATT--TAAGTTGGAANGTGAGGAACAGGGACCTTA--- 54 ** *** * ** ** * * * * * ** * ***** consensus_7862#0 TTGCAGTAGACTATCTTCACCGGTCCGTTGGGGTCCAACCATCAAGCTGTGGGTCTACTT 660 consensus_7862#1 --GTGAGAGACAATCTCTACGGGCCC-TTGGGG--CAACC-CTAAAATGTGGGGCTACCT 108 * **** **** ** ** ** ****** ***** ** ****** **** * consensus_7862#0 CTAGCAATGTGGCTTCTACGATGCTGAATGTATGTATTGAAGCGCTACGGGCAAAGGAAT 720 consensus_7862#1 CCAA-GANGTGGCCTCCA-GATGCTGAATGTATGAATTGAACGCTTANGGGCAAAGGAAT 166 * * * ***** ** * *************** ****** ** ************ consensus_7862#0 TA-TGCTTCGAATCGCAAAGTTGGAAAAGATATTCCAGATACTCTTCCTGAAAATCTTAT 779 consensus_7862#1 TAATGCTCCGAACCGCAAAGTGGAAAAAGATATCCAGATAATCCTCCCTGAAAACCTTAT 226 ** **** **** ******** * ********* * * ** ******** ***** consensus_7862#0 GACTTCTGCTGGACCAGGAAGTCTCCC-AGGATCCAACCGAATTCGTTTTAAAATGGTGC 838 consensus_7862#1 GACTTCTGCGGACCAGGAAAGTCTCCCCGGGATCCAACCGAATCCGTTTTAAAATGGTGC 286 ********* * * * ********* ************** **************** consensus_7862#0 CAAGTGAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAA 898 consensus_7862#1 CAAGTAAAACTGTAAAGCCTAACAAATCGGTGCTTCAGTTGGACGTTAATTATAGAGAAA 346 ***** ****************************************************** consensus_7862#0 AATCTGCTAACGCTCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATC 958 consensus_7862#1 AATCTG-TAACGCGCCTGACATATCGCTGCATACAAGCGATGAAGATGTGTCCATGGATC 405 ****** ****** ********************************************** consensus_7862#0 TTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATT 1018 consensus_7862#1 TTGGTTAACTACTTGGTTTTATATAACTGATTGCTATTGTCTACATAATAACCGCATATT 465 ************************************************************ consensus_7862#0 CTTTTGTAACTAGATGTGAAATAAGACTAAGCTTTAAAAAAAAAAAAAAAA 1069 consensus_7862#1 CTTTTGTAACTAGATGTGAAATAAGA------------------------- 491 ************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||