cluster # 7866

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7866 cluster # 7866 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7866#0 length = 678 sequences # 4

consensus_7866#1 length = 275 sequences # 1

consensusID : consensus_7866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 678
fasta sequence

                              [TTGTCGTC-TCAAATAANAATTTCGC-TC-GA----GATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTTATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTGTAAATATATCTACGTTCT]

[-] EMBL CD194915             [TTGTCGTCTTCAAATAANAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGGATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGA                                                                                                                                 ]
[+] EMBL CD081110             [       c caggccAANAATTTGGC AC GA    GGTGCATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTTATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTGTAAATATATCTACGTTC ]
[-] EMBL CD074933             [                                       GTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTTATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTGTAAATATATCTACGTTCT]
[+] EMBL CD136467             [                                              CTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATGTATTAGGTGAAGAATTAGGTAATGAACTGGCCGACTTAGATCCTACTCATAATATCGNGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGCTCACAAAAAGATGCAGAGGtcct                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_7866#0
TTGTCGTCTCAAATAANAATTTCGCTCGAGATGTATCTACTTGTGATGGTGGATTAATTG
ATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCG
TAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATC
CATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATC
CTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGG
ATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACT
CTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATG
ATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAA
CGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGC
TTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTT
ATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTG
TAAATATATCTACGTTCT

consensusID : consensus_7866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [TGTCGAGGAACTTTTATGGCTGTCTGGTGACCCTGCGCTTAATGACATGGATACGTTGTTTAACCCTTCTGCCTTGCAAGAATATATACTGCTCTGTTGCCAAAAGGTTTCTTACACTCGTCCAGGTCTGAGTGTGCATGCAGATGATTCTTCTGGTGAAAAATTGTCGTCTTCAAATAAAAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCAT]

[+] EMBL CD077725             [TGTCGAGGAACTTTTATGGCTGTCTGGTGACCCTGCGCTTAATGACATGGATACGTTGTTTAACCCTTCTGCCTTGCAAGAATATATACTGCTCTGTTGCCAAAAGGTTTCTTACACTCGTCCAGGTCTGAGTGTGCATGCAGATGATTCTTCTGGTGAAAAATTGTCGTCTTCAAATAAAAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCAT]




>consensus_7866#1
TGTCGAGGAACTTTTATGGCTGTCTGGTGACCCTGCGCTTAATGACATGGATACGTTGTT
TAACCCTTCTGCCTTGCAAGAATATATACTGCTCTGTTGCCAAAAGGTTTCTTACACTCG
TCCAGGTCTGAGTGTGCATGCAGATGATTCTTCTGGTGAAAAATTGTCGTCTTCAAATAA
AAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGG
AAAAAACCCTGATGCATATCACACGTGTTACTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7866#0      TTGTCGTCTCAAATAANAATTTCGCTCGAGATGTATCTACTTGTGATGGTGGATTAATTG 60
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      ATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCG 120
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      TAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATC 180
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      CATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATC 240
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      CTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGG 300
consensus_7866#1      -------------------------------------TGTCGAGGAACTTTTATGGCTGT 23
                                                           ****  * *  ***    **** 

consensus_7866#0      ATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACT 360
consensus_7866#1      CTGGTGACCCTGCGCTTAATGACATGGATACGTTGTTTAACCCTTCTGCCTTGCAAGAAT 83
                       *  **  * * * *  ** **    **     *        *  * **     *  * *

consensus_7866#0      CTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATG 420
consensus_7866#1      ATATACT-GCTCTGT-----TGCCAAAAG-----GTTTCTTACACTCGTCCAGGTCTG-- 130
                       * ***  **  * *     * ******         ******     ****   **   

consensus_7866#0      ATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAA 480
consensus_7866#1      -----AGTGTGCATGCAGATGATTCTTCT--------------GGTGAAAAATTGT-CGT 170
                           ****   *** *    **  * *                 **** * **** *  

consensus_7866#0      CGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGC 540
consensus_7866#1      CTTCAAATAAAAATTTCGCGTCTGAATACGATGTATCTACTTG--TGAT-GGTGGATTAA 227
                      *  *  * * *  **    *  **  *  * *** **  *  *  **** *** * **  

consensus_7866#0      TTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTT 600
consensus_7866#1      TTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCAT------------ 275
                      **  * *  ** * * * ** ****   ** * * * * ****   **            

consensus_7866#0      ATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTG 660
consensus_7866#1      ------------------------------------------------------------
                                                                                  

consensus_7866#0      TAAATATATCTACGTTCT 678
consensus_7866#1      ------------------