These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 678 fasta sequence [TTGTCGTC-TCAAATAANAATTTCGC-TC-GA----GATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTTATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTGTAAATATATCTACGTTCT] [-] EMBL CD194915 [TTGTCGTCTTCAAATAANAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGGATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGA ] [+] EMBL CD081110 [ c caggccAANAATTTGGC AC GA GGTGCATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTTATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTGTAAATATATCTACGTTC ] [-] EMBL CD074933 [ GTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATCCTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACTCTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATGATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAACGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGCTTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTTATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTGTAAATATATCTACGTTCT] [+] EMBL CD136467 [ CTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCGTAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATCCATCACCTGCTGTGGATGTATTAGGTGAAGAATTAGGTAATGAACTGGCCGACTTAGATCCTACTCATAATATCGNGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGGATAATGGTCGCTCACAAAAAGATGCAGAGGtcct ] consensusID : consensus_7866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [TGTCGAGGAACTTTTATGGCTGTCTGGTGACCCTGCGCTTAATGACATGGATACGTTGTTTAACCCTTCTGCCTTGCAAGAATATATACTGCTCTGTTGCCAAAAGGTTTCTTACACTCGTCCAGGTCTGAGTGTGCATGCAGATGATTCTTCTGGTGAAAAATTGTCGTCTTCAAATAAAAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCAT] [+] EMBL CD077725 [TGTCGAGGAACTTTTATGGCTGTCTGGTGACCCTGCGCTTAATGACATGGATACGTTGTTTAACCCTTCTGCCTTGCAAGAATATATACTGCTCTGTTGCCAAAAGGTTTCTTACACTCGTCCAGGTCTGAGTGTGCATGCAGATGATTCTTCTGGTGAAAAATTGTCGTCTTCAAATAAAAATTTCGCGTCTGAATACGATGTATCTACTTGTGATGGTGGATTAATTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7866#0 TTGTCGTCTCAAATAANAATTTCGCTCGAGATGTATCTACTTGTGATGGTGGATTAATTG 60 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 ATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCATTAAGCGGATTGAGCG 120 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 TAGCACAACATTCTCCTCGTTGCCGTGTTGAATCATACCAAAAACATGGTCTTCCTCATC 180 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 CATCACCTGCTGTGGATATATTAGGTGAAGAATTAGGTAATGAACTGGTCGACTTAGATC 240 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 CTACTCATAATATCGTGCATGATGGTTTAGCATTTACTGTCACGTACTTTTCTGAGCTGG 300 consensus_7866#1 -------------------------------------TGTCGAGGAACTTTTATGGCTGT 23 **** * * *** **** consensus_7866#0 ATAATGGTCGTTCACCAAAAGATGCAGAGGAACTAGCGTTGGCGGCAGCGGAAAAGTACT 360 consensus_7866#1 CTGGTGACCCTGCGCTTAATGACATGGATACGTTGTTTAACCCTTCTGCCTTGCAAGAAT 83 * ** * * * * ** ** ** * * * ** * * * consensus_7866#0 CTGTACCCGCATTATCAGTATTCCAAAAACAGAAAAGTCTTACGGAGATCCATACCTATG 420 consensus_7866#1 ATATACT-GCTCTGT-----TGCCAAAAG-----GTTTCTTACACTCGTCCAGGTCTG-- 130 * *** ** * * * ****** ****** **** ** consensus_7866#0 ATACCAGTGATAATGAAATCAATGTTCCCCAGCATTACCAATCAATGAACACTTGTACAA 480 consensus_7866#1 -----AGTGTGCATGCAGATGATTCTTCT--------------GGTGAAAAATTGT-CGT 170 **** *** * ** * * **** * **** * consensus_7866#0 CGCCGTAAATATTTTATAAGATTGTGTGGGGTGTGTCGGCGAGAATGATTGGTTGTTTGC 540 consensus_7866#1 CTTCAAATAAAAATTTCGCGTCTGAATACGATGTATCTACTTG--TGAT-GGTGGATTAA 227 * * * * * ** * ** * * *** ** * * **** *** * ** consensus_7866#0 TTAGTCAGACTTGTAGATACTCTGACAGATGTTAGATGAGTTATATATTCTTCTATCTTT 600 consensus_7866#1 TTGATAAACCTGGAAAAAACCCTGATGCATATCACACGTGTTACTCAT------------ 275 ** * * ** * * * ** **** ** * * * * **** ** consensus_7866#0 ATTATAATTTTTATTATTCTTATTATCGATTGTCACTGAATTGTGTCGGTTTTTGGTGTG 660 consensus_7866#1 ------------------------------------------------------------ consensus_7866#0 TAAATATATCTACGTTCT 678 consensus_7866#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||