cluster # 7870

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Schistosoma mansoni
cluster # 7870 cluster # 7870 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7870#0 length = 435 sequences # 1

consensus_7870#1 length = 413 sequences # 4

consensusID : consensus_7870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTATCATTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATAATAAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATACATAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGGGTAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACATTGAACAAAAGTATAAT]

[+] EMBL CD072982             [AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTATCATTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATAATAAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATACATAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGGGTAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACATTGAACAAAAGTATAAT]




>consensus_7870#0
AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTATCA
TTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATAAT
AAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATACA
TAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGGG
TAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCCAG
CGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCA
ATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACATT
GAACAAAAGTATAAT

consensusID : consensus_7870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 413
fasta sequence

                              [TCCGTTTTGTAAGTAAATTAAATGATAATTTCTAAATTCCTACTGCCCTATCATAAATCCCATTTCCTTTGAAAATGGAAGTAAACCGACTTTTTATTAAATAATAAAATATATAGGGTTTAATAATAAATCAATTTTCTATCTATGTCTAATATATATACATAGCAACTTTCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA]

[-] EMBL AI764930             [TCCGTTTTGTAAGTAAATTAAATGATAATTTCTAAATTCCTACTGCCCTATCATAAATCCCATTTCCTTTGAAAATGGAAGTAAACCGACTTTTTATTAAATAATAAAATATATAGGGTTTAATAATAAATCAATTTTCTATCTATGTCTAATATATATACATAGCAACTTTCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACACTGAACAAGAGTA]
[-] EMBL AI021767             [                                                                                                                                                                           TCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATA ACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA]
[-] EMBL BF440134             [                                                                                                                                                                                            nTTCCTGATTTTGTTGGTAAANATTTATATTGTGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTA                        ]
[-] EMBL AI021766             [                                                                                                                                                                                                                                                             TGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA]




>consensus_7870#1
TCCGTTTTGTAAGTAAATTAAATGATAATTTCTAAATTCCTACTGCCCTATCATAAATCC
CATTTCCTTTGAAAATGGAAGTAAACCGACTTTTTATTAAATAATAAAATATATAGGGTT
TAATAATAAATCAATTTTCTATCTATGTCTAATATATATACATAGCAACTTTCCATTAGC
CAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTGTGTAGATTTGTAGTTGTAAA
CAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCCAGCGAAATTTAGGCTCGTAT
ACACATAGTCACCACCAACAAACATCCCACCATAGGTTACCAATATATTTTTAATTACAC
CTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACATTGAACAAGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7870#0      --AGTTATTGTAAGTAAAATTAAAATGGAATAAATTTTCTAAATTACATACTGCCATTAT 58
consensus_7870#1      TCCGTT-TTGTAAGTAAATT--AAATG--ATAA--TTTCTAAATTCC-TACTGCC-CTAT 51
                         *** *********** *  *****  ****  ********** * *******  ***

consensus_7870#0      CATTATATTCTCATTTTCTTTTTGAAAATAGAGAAGTAAACAGACTTTTTTATTTAAATA 118
consensus_7870#1      CATAA--ATCCCATTTCCTTT--GAAAATGGA--AGTAAACCGACTTTTTA--TTAAATA 103
                      *** *   ** ***** ****  ****** **  ******* ********   *******

consensus_7870#0      ATAAAATAATATAGAGTTTAATAATAAATCAATTTTCTATCCTATGGGCTAATATATATA 178
consensus_7870#1      ATAAAATA-TATAGGGTTTAATAATAAATCAATTTTCTATC-TATGT-CTAATATATATA 160
                      ******** ***** ************************** ****  ************

consensus_7870#0      CATAGCAACTTTCCATTACCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTG 238
consensus_7870#1      CATAGCAACTTTCCATTAGCCAATTAAAGTTCTTGATTTTGTTGGTAAACATTTATATTG 220
                      ****************** *****************************************

consensus_7870#0      GGTAAATTTGTAGTTGTAAACAACATATAAAACTGCTCCAATAGTACTTATAGTAAGGCC 298
consensus_7870#1      TGTAGATTTGTAGTTGTAAACAACATATAAGACTGCTCCAATAGTACTTATAGTAAGGCC 280
                       *** ************************* *****************************

consensus_7870#0      AGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTAC 358
consensus_7870#1      AGCGAAATTTAGGCTCGTATACACATAGTCACCACCAACAAACATCCCACCATAGGTTAC 340
                      ************************************************************

consensus_7870#0      CAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAAAAGTATATTGAGTACA 418
consensus_7870#1      CAATATATTTTTAATTACACCTAAAATGCTAGTTGTTAATGCAGAAGTATATTGAGTACA 400
                      ******************************************* ****************

consensus_7870#0      TTGAACAAAAGTATAAT 435
consensus_7870#1      TTGAACAAGAGTA---- 413
                      ******** ****