cluster # 7871

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Schistosoma mansoni
cluster # 7871 cluster # 7871 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7871#0 length = 660 sequences # 2

consensus_7871#1 length = 541 sequences # 2
consensus_7871#2 length = 366 sequences # 1

consensusID : consensus_7871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence

                              [CACCTTTTATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGATAGTCAGCTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAGAGTTCTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGTAAATCTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATGAACAATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACCAAACTCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAAAACCATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA]

[+] EMBL CD082025             [CACCTTTTATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGATAGTCAGCTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAGAGTTCTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGTAAATCTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATGAACAATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACCAAACTCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAAAACCATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA]
[+] EMBL CD078046             [                                                                          CTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGATAGTCAGCTTACAGAGCTCACCATTTCCATCCG                                                                                                                                                                                                                                                                                                                                  ]




>consensus_7871#0
CACCTTTTATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGT
TTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATA
AAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAAT
ATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGAT
ATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAA
CTGGATAGTCAGCTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAG
AGTTCTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGT
AAATCTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATG
AACAATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACC
AAACTCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAA
AACCATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA

consensusID : consensus_7871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence

                              [AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTAATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGTTATTTATTCTTTTACGGTTTAAGAACTGGATAGTCAGCTTACAGAGCTCACCTTCCATCTG]

[-] EMBL CD178380             [AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTAATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGTTATTTATTCTTTTACGGTTTAAGAACTGGATAGTCAGCTTACAGAGCTCACCTTCCATCTG]
[-] EMBL CD190193             [AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTAATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTG                                                                                                                                                                                                                                         ]




>consensus_7871#1
AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGT
TGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTA
ATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTT
TTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC
TGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT
CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGC
TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA
TGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGT
TATTTATTCTTTTACGGTTTAAGAACTGGATAGTCAGCTTACAGAGCTCACCTTCCATCT
G

consensusID : consensus_7871#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATT]

[+] EMBL AI975139             [TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGAATATTTTTGTGCACTCTATCACTAGTAATAATAAACGTTCTGAGAGTAACAGGCACCTTTTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCTGTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATCAGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGCTGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAATGCAATT]




>consensus_7871#2
TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGTTGTGTAGA
ATATTTTTGTGCACTCTATCACTAGTAATAATAAACGTTCTGAGAGTAACAGGCACCTTT
TCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCCT
GTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAATC
AGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGCT
GTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAAT
GCAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7871#1      AATAGGGTTACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGT 60
consensus_7871#2      --------TACCGTCCGAGTGCCTTCATGACTAAAAGTCGCTTGGCGACCGAATCCCGGT 52
consensus_7871#0      ------------------------------------------------------------
                                                                                  

consensus_7871#1      TGTGTAGAATATTTTTGTGCACTCTATCACTAGTAGTAAGCGCGCTACTAGCGTGTCGTA 120
consensus_7871#2      TGTGTAGAATATTTTTGTGCACTCTATCACTAGTA------------------------- 87
consensus_7871#0      ------------------------------------------------------------
                                                                                  

consensus_7871#1      ATCTGGTGAATTAGAAAACATTTGTAGTATAATAAACGTTCTGAGAGTAACAGGCACCTT 180
consensus_7871#2      ----------------------------ATAATAAACGTTCTGAGAGTAACAGGCACCTT 119
consensus_7871#0      ------------------------------------------------------CACCTT 6
                                                                            ******

consensus_7871#1      TTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC 240
consensus_7871#2      TTCATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC 179
consensus_7871#0      TT-ATCACGTATCGGTCCATTGTCGGTAGTTATTTGGTAAACTACGTATTACGGTTTTCC 65
                      ** *********************************************************

consensus_7871#1      TGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT 300
consensus_7871#2      TGTATTCAACTTTTGGATGGGTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT 239
consensus_7871#0      TGTATTCAACTTTTGGATGGTTAAAGACCGACTGCCTGAGCTTGAAGCTCGTATAAAAAT 125
                      ******************** ***************************************

consensus_7871#1      CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGC 360
consensus_7871#2      CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGGTTGACTTTTCTCAACTAAATATTGC 299
consensus_7871#0      CAGAACTGATAAAAATGCCAGGAAAAATGCAGAGTTTGACTTTTCTCAACTAAATATTGC 185
                      ********************************** *************************

consensus_7871#1      TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA 420
consensus_7871#2      TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA 359
consensus_7871#0      TGTTTTCGATCAGGTCAATGAACTTCACTCTGATATTGATAATTTACGGCGAGATATTAA 245
                      ************************************************************

consensus_7871#1      TGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCCCAACAAGATCCAAGTAATGT 480
consensus_7871#2      TGCAATT----------------------------------------------------- 366
consensus_7871#0      TGCAATTGACAGGCTACAAAAAGATATACTGGCCACACCTCAACAAGATCCAAAACTGGA 305
                      *******                                                     

consensus_7871#1      TATTTATTCTTTTACGGTTTAAGAACTGGAT-----AGTCAGCTTACAGAGCTCACCTTC 535
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      TAGTCAG-CTTACAGAGCTCACCAATTCCATCCGAGAAAGTGCTCATAAAATTCAGAGTT 364
                                                                                  

consensus_7871#1      CATCTG------------------------------------------------------ 541
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      CTTTGAAAGAACTAGGGCAACAGGAAGATGACAAACTTCTGTCAGGATTATCTGGTAAAT 424
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      CTCGTCTAAAGTCGTCTCAGCATGCTGCTATTTCTCGACAATTCGTTCACATTATGAACA 484
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      ATTATAGTCAATTACAAGTAGATTATCGTGACAAGTGTAAGGCTCGAATTCGAACCAAAC 544
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      TCCGTATCGCTGAAGTTCCATTTTCAGAAGATGAAGTTGAGAAGATGTTAGAAAAAAACC 604
                                                                                  

consensus_7871#1      --------------------------------------------------------
consensus_7871#2      --------------------------------------------------------
consensus_7871#0      ATACGGGTATTTTCACACAGGCTATAATGGCTGAAACAGAAGCTGCANAGCGATCA 660