cluster # 7873

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7873 cluster # 7873 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7873#0 length = 656 sequences # 4

consensus_7873#1 length = 195 sequences # 1

consensusID : consensus_7873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 656
fasta sequence

                              [CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGGATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTA-TTAACTAATTGTGTTGACTGATGAAGGAAACGACTTGTA-GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT-ACCACTAGTAGTGTTTGTAGTAGTATTA-AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG-AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGAAATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACCTGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATTAGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG]

[+] EMBL CD060652             [CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGGATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTA TTAACTAATTGTGTTGACTGATGAAGGAAACGACTTGTA GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGTCACCACTAGTAGTGTTTGTAGTAGTATTACACGAATTTATTTGTATTTGTATCAGAAGATGGTGAATATTCTGATCGTCCAGCAGTTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTAC                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD127390             [                                                                  caAATA GTAGGTGTAGAGCTTGATTTACTACTTGTA TTAACTAATTGTGCTGACTGATGAAGGAAACGACTTGTA GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT ACCACTAGTAGTGTTTGTAGTAGTATTA AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGAAATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACCTGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATTAGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG]
[-] EMBL CD183057             [                                                                                                   TGTATTTAACTAATTGTGTTGACTGATGAAAGAAACGAC TGTAGGGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT ACCACTAGTAGTGTTTGTAGTAGTATTA AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGGAAATATCTGATACAGTAGAAAATGATTTTCTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGA                                                                                                                                                                                                                 ]
[-] EMBL CD178301             [                                                                                                                                             TA GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT ACCACTAGTAGTGTTTGTAGTAGTATTA AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACTTTTGAAATATAAGATGACCGTCGTGAATTACCATCccttccat                                                                                                                                          ]




>consensus_7873#0
CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGG
ATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTATTAACTAATTGTGTTGA
CTGATGAAGGAAACGACTTGTAGGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTG
AACAGTAGTAGCATTGGTACCACTAGTAGTGTTTGTAGTAGTATTAAAGAATTTATTTGT
ATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAGAATTATTAGTAGTATACGATGA
ATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGA
TAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGA
TGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGA
AATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACC
TGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATT
AGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG

consensusID : consensus_7873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [CGTTCATATAATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAACGTGATCACGAGGAGTACGAGTTGGCGAAGAATAATCTGTACTATTAGTACTGTTGTTATGATTATTAGTTGAAACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACTATTTGATGTGATCTGTGAAGGATTCCATGAA]

[+] EMBL CD067693             [CGTTCATATAATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAACGTGATCACGAGGAGTACGAGTTGGCGAAGAATAATCTGTACTATTAGTACTGTTGTTATGATTATTAGTTGAAACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACTATTTGATGTGATCTGTGAAGGATTCCATGAA]




>consensus_7873#1
CGTTCATATAATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAACGTGATCACGAGGA
GTACGAGTTGGCGAAGAATAATCTGTACTATTAGTACTGTTGTTATGATTATTAGTTGAA
ACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACTATTTGATGTGATCTGT
GAAGGATTCCATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7873#0      CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGG 60
consensus_7873#1      ------------------------------------------------------------
                                                                                  

consensus_7873#0      ATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTATTAACTAATTGTGTTGA 120
consensus_7873#1      ------------CGTTCATATA-ATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAAC 47
                                   **   * ** * * *  ** *    * * **      ******    

consensus_7873#0      CTGATGAAGGAAACGACTTGTAGGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTG 180
consensus_7873#1      GTGATCACGAGGAGTACGAGTTGGCGAA-GAATAAT--CTGTACTATTAGTACTGTTGTT 104
                       **** * *   *  **  ** ***    *******  ** **  ** * *    ** * 

consensus_7873#0      AACAGTAGTAGCATTGGTACCACTAGTAGTGTTTGTAGTAGTATTAAAGAATTTATTTGT 240
consensus_7873#1      ATGATTATTAGTTGAAACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACT 164
                      *  * ** ***       ***** ** * * **   * **  * *    *  *****  *

consensus_7873#0      ATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAGAATTATTAGTAGTATACGATGA 300
consensus_7873#1      ATTTGATGTGATCTGTGAAGGATTCCATGAA----------------------------- 195
                      *****          **  * **    ***                              

consensus_7873#0      ATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGA 360
consensus_7873#1      ------------------------------------------------------------
                                                                                  

consensus_7873#0      TAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGA 420
consensus_7873#1      ------------------------------------------------------------
                                                                                  

consensus_7873#0      TGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGA 480
consensus_7873#1      ------------------------------------------------------------
                                                                                  

consensus_7873#0      AATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACC 540
consensus_7873#1      ------------------------------------------------------------
                                                                                  

consensus_7873#0      TGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATT 600
consensus_7873#1      ------------------------------------------------------------
                                                                                  

consensus_7873#0      AGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG 656
consensus_7873#1      --------------------------------------------------------