These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 656 fasta sequence [CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGGATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTA-TTAACTAATTGTGTTGACTGATGAAGGAAACGACTTGTA-GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT-ACCACTAGTAGTGTTTGTAGTAGTATTA-AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG-AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGAAATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACCTGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATTAGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG] [+] EMBL CD060652 [CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGGATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTA TTAACTAATTGTGTTGACTGATGAAGGAAACGACTTGTA GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGTCACCACTAGTAGTGTTTGTAGTAGTATTACACGAATTTATTTGTATTTGTATCAGAAGATGGTGAATATTCTGATCGTCCAGCAGTTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTAC ] [+] EMBL CD127390 [ caAATA GTAGGTGTAGAGCTTGATTTACTACTTGTA TTAACTAATTGTGCTGACTGATGAAGGAAACGACTTGTA GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT ACCACTAGTAGTGTTTGTAGTAGTATTA AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGAAATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACCTGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATTAGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG] [-] EMBL CD183057 [ TGTATTTAACTAATTGTGTTGACTGATGAAAGAAACGAC TGTAGGGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT ACCACTAGTAGTGTTTGTAGTAGTATTA AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGGAAATATCTGATACAGTAGAAAATGATTTTCTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGA ] [-] EMBL CD178301 [ TA GGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTGAACAGTAGTAGCATTGGT ACCACTAGTAGTGTTTGTAGTAGTATTA AAGAATTTATTTGTATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAG AATTATTAGTAGTATACGATGAATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGATAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGATGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACTTTTGAAATATAAGATGACCGTCGTGAATTACCATCccttccat ] consensusID : consensus_7873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [CGTTCATATAATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAACGTGATCACGAGGAGTACGAGTTGGCGAAGAATAATCTGTACTATTAGTACTGTTGTTATGATTATTAGTTGAAACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACTATTTGATGTGATCTGTGAAGGATTCCATGAA] [+] EMBL CD067693 [CGTTCATATAATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAACGTGATCACGAGGAGTACGAGTTGGCGAAGAATAATCTGTACTATTAGTACTGTTGTTATGATTATTAGTTGAAACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACTATTTGATGTGATCTGTGAAGGATTCCATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7873#0 CACACGAGCACTATTCAATACAGTGGTAACATTATTACTATTAGGTGTGATCTGTGAAGG 60 consensus_7873#1 ------------------------------------------------------------ consensus_7873#0 ATTCCATGAATATGTAGGTGTAGAGCTTGAATTACTACTTGTATTAACTAATTGTGTTGA 120 consensus_7873#1 ------------CGTTCATATA-ATCGTTTATAATCTTTGGAATCTTGCCATTGTGAAAC 47 ** * ** * * * ** * * * ** ****** consensus_7873#0 CTGATGAAGGAAACGACTTGTAGGCCTTTGAATAATGCCTTTAACATCATTTTCATTTTG 180 consensus_7873#1 GTGATCACGAGGAGTACGAGTTGGCGAA-GAATAAT--CTGTACTATTAGTACTGTTGTT 104 **** * * * ** ** *** ******* ** ** ** * * ** * consensus_7873#0 AACAGTAGTAGCATTGGTACCACTAGTAGTGTTTGTAGTAGTATTAAAGAATTTATTTGT 240 consensus_7873#1 ATGATTATTAGTTGAAACACCACGAGCACTATTCAAAATACCAGTGGTAACATTATTACT 164 * * ** *** ***** ** * * ** * ** * * * ***** * consensus_7873#0 ATTTGTATAAGAAGATGGTGAATATTCTGATCGTCCAGAATTATTAGTAGTATACGATGA 300 consensus_7873#1 ATTTGATGTGATCTGTGAAGGATTCCATGAA----------------------------- 195 ***** ** * ** *** consensus_7873#0 ATTGTGATCTGACATACGACGTTCGAAAATATCTGATACAGTAGAAAATGATTTACTGGA 360 consensus_7873#1 ------------------------------------------------------------ consensus_7873#0 TAATACTCGTTCAGGTGGATTACGTTCACGAATATGACGACGTTCACGAACTCCTCCTGA 420 consensus_7873#1 ------------------------------------------------------------ consensus_7873#0 TGTTGTATAGTCAGTTTTATTCTCTGACGTAGGACTATGCTCTGAAGACCGTACCTTTGA 480 consensus_7873#1 ------------------------------------------------------------ consensus_7873#0 AATATAAGATGACCGGCGTGAATTACCATCATACGTAGAAGAATTCATGTTTGTTTCACC 540 consensus_7873#1 ------------------------------------------------------------ consensus_7873#0 TGAAAAGTTAACATGACGACCAGTTGAAGCAGGATGATGACTTGAAGATCGAGTGTCATT 600 consensus_7873#1 ------------------------------------------------------------ consensus_7873#0 AGTTTCTCGTTCATTAGTTGAATAATCAGGACGTGCAGATGACCTGCCAATACTCG 656 consensus_7873#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||